Magnesium in PDB 5vw7: Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase

All present enzymatic activity of Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase:
1.18.1.2;

The structure of Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase, PDB code: 5vw7 was solved by K.M.Kean, R.A.Carpenter, A.R.Hall, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.45 / 1.61
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	59.188, 59.188, 188.032, 90.00, 90.00, 120.00
R / Rfree (%)	13.1 / 15.6

The binding sites of Magnesium atom in the Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase (pdb code 5vw7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase, PDB code: 5vw7:

Magnesium binding site 1 out of 1 in the Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Nadph Soak of Y316A Mutant of Corn Root Ferredoxin:Nadp+ Reductase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:26.8 occ:1.00 O A:HOH738 2.0 23.5 1.0 O A:HOH957 2.1 33.7 1.0 O A:HOH599 2.1 23.1 1.0 O A:HOH659 2.1 27.7 1.0 O A:HOH947 2.1 26.0 1.0 O A:HOH827 2.2 33.5 1.0 HA A:ASP211 3.9 27.1 1.0 O A:HOH680 4.0 20.4 1.0 HA A:VAL45 4.1 19.4 1.0 O A:HOH684 4.1 55.5 1.0 O A:HOH875 4.1 43.8 1.0 O A:HOH560 4.2 28.9 1.0 HB2 A:LEU213 4.2 21.2 1.0 O A:SER210 4.2 22.1 1.0 O A:ASP211 4.2 19.9 1.0 O A:HOH536 4.3 40.3 1.0 O A:HOH720 4.3 30.1 1.0 H A:GLY46 4.3 22.1 1.0 O A:LEU44 4.3 16.4 1.0 O A:LEU213 4.4 15.8 1.0 O A:HOH873 4.4 53.7 1.0 C A:ASP211 4.7 20.9 1.0 CA A:ASP211 4.7 22.6 1.0 N A:GLY46 4.7 18.4 1.0 H A:LEU213 4.7 21.4 1.0 OE2 A:GLU217 5.0 31.2 1.0 HA3 A:GLY46 5.0 28.6 1.0 O A:HOH671 5.0 16.9 1.0

K.M.Kean, R.A.Carpenter, V.Pandini, G.Zanetti, A.R.Hall, R.Faber, A.Aliverti, P.A.Karplus. High-Resolution Studies of Hydride Transfer in the Ferredoxin:Nadp(+) Reductase Superfamily. Febs J. V. 284 3302 2017.
ISSN: ISSN 1742-4658
PubMed: 28783258
DOI: 10.1111/FEBS.14190