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Magnesium in PDB 6cth: Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao

Protein crystallography data

The structure of Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao, PDB code: 6cth was solved by T.R.Tosarini, G.S.Profeta, C.V.Dos Reis, R.M.Counago, K.B.Massirer, A.M.Edwards, J.M.Elkins, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.798, 56.798, 358.040, 90.00, 90.00, 120.00
R / Rfree (%) 20.8 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao (pdb code 6cth). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao, PDB code: 6cth:

Magnesium binding site 1 out of 1 in 6cth

Go back to Magnesium Binding Sites List in 6cth
Magnesium binding site 1 out of 1 in the Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg602

b:31.1
occ:1.00
OD2 A:ASP393 2.0 29.7 1.0
O A:HOH757 2.0 33.4 1.0
O A:HOH767 2.1 35.0 1.0
O A:HOH816 2.1 34.1 1.0
OD2 A:ASP411 2.1 32.2 1.0
O A:HOH714 2.2 32.6 1.0
CG A:ASP411 3.1 31.4 1.0
CG A:ASP393 3.1 29.9 1.0
OD1 A:ASP411 3.4 32.0 1.0
CB A:ASP393 3.7 29.1 1.0
OD1 A:ASP393 4.2 29.4 1.0
OE1 A:GLU310 4.2 42.9 1.0
O A:HOH709 4.2 42.7 1.0
ND2 A:ASN398 4.2 29.2 1.0
O A:HOH702 4.2 41.1 1.0
O A:HOH765 4.2 35.9 1.0
CA A:GLY279 4.5 44.5 1.0
O A:HOH782 4.5 51.3 1.0
CB A:ASP411 4.5 30.5 1.0
O A:HOH759 4.7 29.1 1.0
CD1 A:LEU414 4.7 34.3 1.0
CE A:LYS395 4.7 31.6 1.0
NZ A:LYS395 4.8 32.6 1.0
CG A:LEU414 4.9 33.6 1.0
OD1 A:ASN398 4.9 31.9 1.0

Reference:

T.R.Tosarini, G.S.Profeta, C.V.Dos Reis, R.M.Counago, K.B.Massirer, J.M.C.Mondego, A.M.Edwards, J.M.Elkins. Crystal Structure of Pathogenesis-Related Protein 1G (Pr-1G) Kinase Domain From Cacao To Be Published.
Page generated: Wed Aug 13 04:48:35 2025

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