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Magnesium in PDB 6dwt: Crystal Structure of Double-Stranded Dna Gaggcctc, Crystals Grown in MG2+

Protein crystallography data

The structure of Crystal Structure of Double-Stranded Dna Gaggcctc, Crystals Grown in MG2+, PDB code: 6dwt was solved by C.Hou, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 44.255, 44.255, 23.597, 90.00, 90.00, 90.00
R / Rfree (%) 18.7 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Double-Stranded Dna Gaggcctc, Crystals Grown in MG2+ (pdb code 6dwt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Double-Stranded Dna Gaggcctc, Crystals Grown in MG2+, PDB code: 6dwt:

Magnesium binding site 1 out of 1 in 6dwt

Go back to Magnesium Binding Sites List in 6dwt
Magnesium binding site 1 out of 1 in the Crystal Structure of Double-Stranded Dna Gaggcctc, Crystals Grown in MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Double-Stranded Dna Gaggcctc, Crystals Grown in MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:44.3
occ:1.00
OP1 A:DC16 2.7 41.8 1.0
O3' A:DT15 3.8 31.1 1.0
P A:DC16 3.8 32.2 1.0
C5' A:DC16 3.9 37.3 1.0
O5' A:DC16 4.3 35.2 1.0
O A:HOH213 4.7 59.8 1.0

Reference:

C.Hou, O.V.Tsodikov. Utilizing Guanine Coordinated ZN2+ to Determine Dna Crystal Structures By Single-Wavelength Anomalous Diffraction Acta Crystallogr.,Sect.D V. 75 32 2019.
ISSN: ISSN 0907-4449
Page generated: Mon Sep 30 23:42:56 2024

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