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Magnesium in PDB 6gej: Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.

Enzymatic activity of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.

All present enzymatic activity of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.:
3.6.4.12;

Other elements in 6gej:

The structure of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. (pdb code 6gej). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution., PDB code: 6gej:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 6gej

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Magnesium binding site 1 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Mg1603

b:14.8
occ:1.00
 F3 M:BEF1602 2.2 9.8 1.0
OD1 M:ASP824 3.0 0.5 1.0
O3B M:ADP1601 3.3 10.8 1.0
O3A M:ADP1601 3.3 4.1 1.0
BE M:BEF1602 3.7 15.0 1.0
CG M:ASP824 3.7 0.5 1.0
OD2 M:ASP824 3.7 0.5 1.0
PB M:ADP1601 4.0 15.2 1.0
NZ M:LYS727 4.1 0.6 1.0
O1A M:ADP1601 4.2 4.3 1.0
F1 M:BEF1602 4.2 12.6 1.0
OG1 M:THR728 4.3 54.8 1.0
PA M:ADP1601 4.3 7.5 1.0
O1B M:ADP1601 4.5 31.8 1.0
F2 M:BEF1602 4.6 10.1 1.0
CE M:LYS727 4.7 0.6 1.0
O2A M:ADP1601 4.7 6.7 1.0
O M:GLY1327 4.8 94.0 1.0

Magnesium binding site 2 out of 8 in 6gej

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Magnesium binding site 2 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg503

b:39.1
occ:1.00
 O1B R:ADP501 2.1 39.1 1.0
F3 R:BEF502 2.4 39.1 1.0
PB R:ADP501 3.5 39.1 1.0
BE R:BEF502 3.7 39.1 1.0
OD1 R:ASP9 4.1 0.0 1.0
F1 R:BEF502 4.1 39.1 1.0
O3B R:ADP501 4.1 39.1 1.0
O3A R:ADP501 4.2 39.1 1.0
OD2 R:ASP192 4.2 90.0 1.0
CG2 R:VAL133 4.4 92.5 1.0
O2B R:ADP501 4.6 39.1 1.0
OD2 R:ASP9 4.7 0.0 1.0
CG R:ASP9 4.8 0.0 1.0
O R:ASN10 4.9 0.8 1.0
F2 R:BEF502 4.9 39.1 1.0
CA R:GLY11 4.9 0.8 1.0

Magnesium binding site 3 out of 8 in 6gej

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Magnesium binding site 3 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Mg501

b:24.0
occ:1.00
 O3B T:ADP501 2.4 0.5 1.0
NH2 U:ARG350 2.5 31.0 1.0
OE2 U:GLU314 3.0 37.1 1.0
OG1 T:THR86 3.7 24.2 1.0
O2A T:ADP501 3.7 0.5 1.0
CZ U:ARG350 3.7 31.0 1.0
CD U:GLU314 3.9 37.1 1.0
PB T:ADP501 3.9 0.5 1.0
OE1 U:GLU314 4.2 37.1 1.0
CB T:THR86 4.3 24.2 1.0
NE U:ARG350 4.5 31.0 1.0
NH1 T:ARG413 4.5 30.2 1.0
NH1 U:ARG350 4.5 31.0 1.0
O3A T:ADP501 4.6 0.5 1.0
CG2 T:THR86 4.7 24.2 1.0
O1B T:ADP501 4.7 0.5 1.0
PA T:ADP501 4.7 0.5 1.0
O2B T:ADP501 4.8 0.5 1.0
O U:ASN310 5.0 27.5 1.0

Magnesium binding site 4 out of 8 in 6gej

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Magnesium binding site 4 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Mg503

b:24.0
occ:1.00
 OG1 U:THR82 2.6 34.5 1.0
O2B U:ADP502 3.0 0.5 1.0
O3B U:ADP502 3.2 0.5 1.0
PB U:ADP502 3.6 0.5 1.0
OD1 U:ASP296 3.6 32.1 1.0
CB U:THR82 4.0 34.5 1.0
OE2 U:GLU297 4.0 32.0 1.0
OD1 U:ASN326 4.3 39.8 1.0
O2A U:ADP502 4.4 0.5 1.0
CG U:ASP296 4.4 32.1 1.0
O1B U:ADP502 4.4 0.5 1.0
ND2 U:ASN326 4.5 39.8 1.0
N U:THR82 4.7 30.5 1.0
CG2 U:THR82 4.7 34.5 1.0
OE2 V:GLU329 4.7 38.5 1.0
CA U:THR82 4.8 30.5 1.0
OD2 U:ASP296 4.8 32.1 1.0
CG U:ASN326 4.8 39.8 1.0
O3A U:ADP502 4.9 0.5 1.0
CD U:GLU297 4.9 32.0 1.0
NZ U:LYS81 5.0 34.5 1.0

Magnesium binding site 5 out of 8 in 6gej

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Magnesium binding site 5 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Mg502

b:24.0
occ:1.00
 OG1 V:THR86 2.4 34.9 1.0
O3B V:ADP501 2.8 1.0 1.0
CB V:THR86 3.6 34.9 1.0
PB V:ADP501 3.9 1.0 1.0
NZ V:LYS85 3.9 33.5 1.0
OD1 V:ASP311 3.9 35.7 1.0
O2B V:ADP501 4.0 1.0 1.0
OE2 V:GLU312 4.0 38.9 1.0
OE1 V:GLU312 4.3 38.9 1.0
CG2 V:THR86 4.3 34.9 1.0
CD V:GLU312 4.5 38.9 1.0
O1A V:ADP501 4.5 1.0 1.0
CA V:THR86 4.7 35.2 1.0
N V:THR86 4.7 35.2 1.0
CG V:ASP311 4.7 35.7 1.0
O1B V:ADP501 4.8 1.0 1.0
NH2 W:ARG350 5.0 34.1 1.0

Magnesium binding site 6 out of 8 in 6gej

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Magnesium binding site 6 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Mg502

b:24.0
occ:1.00
 O3B W:ADP501 2.4 0.6 1.0
OE2 W:GLU297 3.0 36.7 1.0
OG1 W:THR82 3.0 33.1 1.0
OE1 W:GLU297 3.6 36.7 1.0
CD W:GLU297 3.6 36.7 1.0
PB W:ADP501 3.7 0.6 1.0
NH2 X:ARG366 4.0 32.2 1.0
O1B W:ADP501 4.2 0.6 1.0
CB W:THR82 4.2 33.1 1.0
O2B W:ADP501 4.3 0.6 1.0
CG2 W:THR82 4.6 33.1 1.0
OD1 W:ASP296 4.6 27.5 1.0
ND2 W:ASN326 4.7 38.7 1.0
O1A W:ADP501 4.8 0.6 1.0
CE W:LYS81 4.9 28.4 1.0
O3A W:ADP501 4.9 0.6 1.0

Magnesium binding site 7 out of 8 in 6gej

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Magnesium binding site 7 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Mg502

b:24.0
occ:1.00
 OG1 X:THR86 2.5 37.2 1.0
O3B X:ADP501 2.7 0.3 1.0
O2A X:ADP501 3.5 0.3 1.0
CG2 X:THR86 3.5 37.2 1.0
CB X:THR86 3.5 37.2 1.0
OD1 X:ASP311 3.8 29.9 1.0
CG X:ASP311 4.2 29.9 1.0
OD2 X:ASP311 4.2 29.9 1.0
PB X:ADP501 4.2 0.3 1.0
NH1 Y:ARG350 4.4 40.5 1.0
NH2 Y:ARG350 4.4 40.5 1.0
PA X:ADP501 4.5 0.3 1.0
OE2 Y:GLU314 4.5 52.7 1.0
CA X:THR86 4.6 37.6 1.0
N X:THR86 4.7 37.6 1.0
O3A X:ADP501 4.8 0.3 1.0
O1A X:ADP501 4.8 0.3 1.0
O1B X:ADP501 4.9 0.3 1.0
CZ Y:ARG350 4.9 40.5 1.0
OE1 X:GLU312 4.9 28.1 1.0

Magnesium binding site 8 out of 8 in 6gej

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Magnesium binding site 8 out of 8 in the Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Chromatin Remodeller-Nucleosome Complex at 3.6 A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
Y:Mg502

b:24.0
occ:1.00
 OG1 Y:THR82 2.1 35.6 1.0
OD2 Y:ASP296 2.8 34.6 1.0
OE2 Y:GLU297 2.9 39.8 1.0
OD1 Y:ASP296 2.9 34.6 1.0
O2B Y:ADP501 3.1 0.6 1.0
CG Y:ASP296 3.2 34.6 1.0
CB Y:THR82 3.3 35.6 1.0
CG2 Y:THR82 3.5 35.6 1.0
CD Y:GLU297 4.1 39.8 1.0
O3B Y:ADP501 4.2 0.6 1.0
PB Y:ADP501 4.2 0.6 1.0
O2A Y:ADP501 4.2 0.6 1.0
CA Y:THR82 4.3 37.9 1.0
N Y:THR82 4.6 37.9 1.0
CG Y:GLU297 4.6 39.8 1.0
OE2 T:GLU329 4.7 42.8 1.0
NH2 T:ARG366 4.7 29.1 1.0
CB Y:ASP296 4.7 34.6 1.0
PA Y:ADP501 5.0 0.6 1.0
OE1 T:GLU329 5.0 42.8 1.0

Reference:

O.Willhoft, M.Ghoneim, C.L.Lin, E.Y.D.Chua, M.Wilkinson, Y.Chaban, R.Ayala, E.A.Mccormack, L.Ocloo, D.S.Rueda, D.B.Wigley. Structure and Dynamics of the Yeast SWR1-Nucleosome Complex. Science V. 362 2018.
ISSN: ESSN 1095-9203
PubMed: 30309918
DOI: 10.1126/SCIENCE.AAT7716
Page generated: Tue Oct 1 01:07:03 2024

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