Magnesium in PDB 6gyf: Crystal Structure of Nadr Protein in Complex with Nr

The structure of Crystal Structure of Nadr Protein in Complex with Nr, PDB code: 6gyf was solved by R.Singh, A.Stetsenko, M.Jaehme, A.Guskov, D.J.Slotboom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.83 / 2.70
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	165.090, 165.090, 193.050, 90.00, 90.00, 120.00
R / Rfree (%)	19.8 / 23.9

The binding sites of Magnesium atom in the Crystal Structure of Nadr Protein in Complex with Nr (pdb code 6gyf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Nadr Protein in Complex with Nr, PDB code: 6gyf:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Nadr Protein in Complex with Nr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Nadr Protein in Complex with Nr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg404 b:78.5 occ:1.00 NH1 A:ARG329 2.9 0.6 1.0 OE2 A:GLU333 3.5 0.5 1.0 NH2 A:ARG266 3.5 84.8 1.0 OE1 A:GLU333 3.7 0.9 1.0 CE A:LYS270 3.7 96.5 1.0 CZ A:ARG329 3.8 0.7 1.0 CD A:GLU333 4.0 0.4 1.0 NH1 A:ARG266 4.0 78.9 1.0 NZ A:LYS270 4.1 0.1 1.0 NH2 A:ARG329 4.1 0.5 1.0 CZ A:ARG266 4.2 77.4 1.0 CE2 A:PHE278 4.9 90.7 1.0 NE A:ARG329 4.9 0.1 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Nadr Protein in Complex with Nr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Nadr Protein in Complex with Nr within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg405 b:76.8 occ:1.00 CD A:ARG177 3.4 96.8 1.0 OE2 A:GLU72 3.5 69.0 1.0 OE1 A:GLU72 3.9 72.4 1.0 O A:VAL174 3.9 58.4 1.0 CG1 A:VAL174 4.0 59.2 1.0 NH1 A:ARG177 4.0 98.8 1.0 CD A:GLU72 4.1 72.3 1.0 CB A:ARG177 4.1 89.0 1.0 CG A:ARG177 4.3 96.8 1.0 NE A:ARG177 4.4 99.9 1.0 CA A:VAL174 4.4 61.4 1.0 C A:VAL174 4.6 57.1 1.0 CZ A:ARG177 4.6 99.4 1.0 CB A:VAL174 4.8 59.4 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Nadr Protein in Complex with Nr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Nadr Protein in Complex with Nr within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg404 b:77.3 occ:1.00 OE1 B:GLU333 3.3 0.4 1.0 CE B:LYS270 3.3 95.1 1.0 NH2 B:ARG266 3.5 81.1 1.0 OE2 B:GLU333 3.6 0.2 1.0 NZ B:LYS270 3.8 0.3 1.0 CD B:GLU333 3.8 0.0 1.0 CZ B:ARG266 4.4 75.5 1.0 NH1 B:ARG266 4.4 83.3 1.0 CD B:LYS270 4.6 90.3 1.0 CE2 B:PHE278 4.6 90.2 1.0 CZ B:PHE278 4.9 88.2 1.0

R.Singh, A.Stetsenko, M.Jaehme, A.Guskov, D.J.Slotboom. Crystal Structure of Nadr Protein in Complex with Nr To Be Published.