Magnesium in PDB 6iym: Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum

The structure of Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum, PDB code: 6iym was solved by J.H.Lee, C.W.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.91 / 2.10
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	120.437, 72.656, 63.374, 90.00, 101.68, 90.00
R / Rfree (%)	20.2 / 26.9

The binding sites of Magnesium atom in the Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum (pdb code 6iym). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum, PDB code: 6iym:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:47.4 occ:1.00 OE2 A:GLU126 2.0 43.7 1.0 OE2 A:GLU124 2.0 44.6 1.0 OD2 A:ASP155 2.1 41.5 1.0 CD A:GLU126 3.1 44.6 1.0 CG A:ASP155 3.1 35.3 1.0 CD A:GLU124 3.3 46.4 1.0 CB A:ASP155 3.5 35.7 1.0 OE1 A:GLU126 3.5 43.9 1.0 NZ A:LYS172 3.9 45.1 1.0 O A:VAL75 4.0 43.4 1.0 OE1 A:GLU124 4.1 50.3 1.0 CB A:GLU124 4.2 39.5 1.0 OD1 A:ASP155 4.2 41.6 1.0 CG A:GLU124 4.3 43.8 1.0 CG A:GLU126 4.4 39.5 1.0 CZ A:PHE97 4.4 55.5 1.0 CA A:GLY240 4.7 39.5 1.0 CE2 A:PHE97 4.8 52.7 1.0 CB A:THR241 4.8 40.7 1.0 CG2 A:THR241 4.9 46.3 1.0 CA A:ASP155 5.0 36.6 1.0 C A:GLY240 5.0 40.2 1.0

Magnesium binding site 2 out of 2 in the Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:55.6 occ:1.00 OE2 B:GLU126 2.0 46.4 1.0 OD2 B:ASP155 2.0 41.8 1.0 OE2 B:GLU124 2.1 47.0 1.0 CD B:GLU126 3.0 47.5 1.0 CG B:ASP155 3.1 40.2 1.0 OE1 B:GLU126 3.3 46.9 1.0 CD B:GLU124 3.3 50.0 1.0 CB B:ASP155 3.5 37.9 1.0 O B:VAL75 3.7 57.9 1.0 NZ B:LYS172 4.0 52.6 1.0 OE1 B:GLU124 4.2 53.2 1.0 OD1 B:ASP155 4.2 42.1 1.0 CB B:GLU124 4.3 41.1 1.0 CG B:GLU124 4.3 48.3 1.0 CG B:GLU126 4.4 46.5 1.0 CZ B:PHE97 4.4 57.1 1.0 O B:HOH404 4.4 50.3 1.0 CA B:GLY240 4.6 51.3 1.0 CE2 B:PHE97 4.7 54.3 1.0 C B:VAL75 4.9 50.5 1.0 CB B:CYS74 4.9 42.6 1.0 CB B:THR241 5.0 55.9 1.0 N B:THR241 5.0 51.0 1.0

W.Yoo, C.W.Lee, B.Y.Kim, L.T.Huong Luu Le, S.H.Park, H.W.Kim, S.C.Shin, K.K.Kim, J.H.Lee, T.D.Kim. Structural and Functional Analysis of A Dimeric Fumarylacetoacetate Hydrolase (Eafah) From Psychrophilic Exiguobacterium Antarcticum. Biochem. Biophys. Res. V. 509 773 2019COMMUN..
ISSN: ESSN 1090-2104
PubMed: 30630595
DOI: 10.1016/J.BBRC.2018.12.183