Atomistry » Magnesium » PDB 6jwt-6k77 » 6jx2
Atomistry »
  Magnesium »
    PDB 6jwt-6k77 »
      6jx2 »

Magnesium in PDB 6jx2: Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum

Enzymatic activity of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum

All present enzymatic activity of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum:
1.1.1.86;

Protein crystallography data

The structure of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum, PDB code: 6jx2 was solved by D.Lee, J.Hong, K.-J.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.91 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.949, 90.179, 157.817, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 26.7

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 13;

Binding sites:

The binding sites of Magnesium atom in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum (pdb code 6jx2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 13 binding sites of Magnesium where determined in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum, PDB code: 6jx2:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 1 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:46.8
occ:1.00
 OE2 A:GLU196 2.3 43.1 1.0
OD2 A:ASP192 2.4 38.7 1.0
CG A:ASP192 3.3 34.5 1.0
CD A:GLU196 3.4 42.6 1.0
OD1 A:ASP192 3.5 43.7 1.0
OE1 A:GLU196 3.9 44.5 1.0
OG B:SER253 4.2 36.5 1.0
MG B:MG401 4.6 50.1 1.0
CG A:GLU196 4.6 38.9 1.0
CB A:ASP192 4.7 33.1 1.0
CE1 A:HIS109 5.0 38.7 1.0
ND1 A:HIS109 5.0 37.7 1.0

Magnesium binding site 2 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 2 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:50.5
occ:1.00
 OE1 A:GLU232 2.3 54.5 1.0
OD1 B:ASP192 2.4 35.9 1.0
OE1 A:GLU228 2.8 47.2 1.0
OE2 B:GLU196 2.9 43.4 1.0
CD A:GLU232 3.4 50.3 1.0
CG B:ASP192 3.5 33.1 1.0
CG B:GLU196 3.6 38.4 1.0
CD B:GLU196 3.6 38.5 1.0
OE2 A:GLU232 3.9 55.1 1.0
CD2 B:LEU200 3.9 43.3 1.0
CD A:GLU228 3.9 47.4 1.0
OD2 B:ASP192 4.1 35.9 1.0
MG B:MG402 4.2 45.9 1.0
OE2 A:GLU228 4.3 58.6 1.0
O B:ASP192 4.5 34.3 1.0
CG A:GLU232 4.6 44.8 1.0
OE1 B:GLU196 4.7 40.2 1.0
CB B:ASP192 4.7 32.5 1.0
CB A:GLU232 4.8 42.0 1.0
CA B:ASP192 4.9 34.7 1.0

Magnesium binding site 3 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 3 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg403

b:59.7
occ:1.00
 OD1 A:ASN100 2.0 48.4 1.0
OD2 A:ASP103 2.6 45.8 1.0
O A:ALA75 2.9 40.1 1.0
O A:ASN98 3.0 44.4 1.0
CG A:ASN100 3.2 43.8 1.0
CG A:ASP103 3.3 39.4 1.0
OD1 A:ASP103 3.3 45.4 1.0
O A:ALA73 3.7 43.2 1.0
ND2 A:ASN100 3.9 50.0 1.0
O A:ALA72 4.0 37.1 1.0
C A:ALA75 4.1 35.7 1.0
C A:ASN98 4.3 41.3 1.0
CB A:ASN100 4.3 43.2 1.0
C A:ALA73 4.6 37.6 1.0
N A:ASN100 4.6 48.2 1.0
CB A:ASP103 4.7 37.5 1.0
N A:ALA75 4.8 33.2 1.0
CA A:ALA73 4.9 38.0 1.0
N A:ASP76 5.0 35.1 1.0

Magnesium binding site 4 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 4 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg404

b:59.3
occ:1.00
 OD1 A:ASP254 2.4 42.0 1.0
O A:TYR250 3.5 40.9 1.0
CG A:ASP254 3.7 44.7 1.0
O A:VAL252 3.8 39.3 1.0
OE1 A:GLU257 4.0 43.9 1.0
OD2 A:ASP254 4.2 45.6 1.0
O A:ASN249 4.3 39.5 1.0
C A:TYR250 4.3 47.0 1.0
CA A:TYR250 4.6 50.8 1.0
NH2 B:ARG307 4.8 44.5 1.0
N A:ASP254 4.8 40.7 1.0
CB A:ASP254 4.9 41.2 1.0
CA A:ASP254 5.0 41.0 1.0

Magnesium binding site 5 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 5 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg401

b:50.1
occ:1.00
 OD1 A:ASP192 1.9 43.7 1.0
OE1 B:GLU228 2.1 49.8 1.0
OE1 B:GLU232 2.2 65.1 1.0
CG A:ASP192 3.1 34.5 1.0
CD B:GLU232 3.1 59.1 1.0
CD B:GLU228 3.3 45.5 1.0
OE2 B:GLU232 3.4 68.0 1.0
OE2 A:GLU196 3.8 43.1 1.0
CA A:ASP192 3.9 31.4 1.0
CB A:ASP192 4.0 33.1 1.0
OD2 A:ASP192 4.0 38.7 1.0
OE2 B:GLU228 4.0 54.7 1.0
O A:ASP192 4.1 33.0 1.0
CG A:GLU196 4.3 38.9 1.0
CD1 A:LEU200 4.4 39.4 1.0
C A:ASP192 4.4 29.9 1.0
CG B:GLU228 4.4 42.0 1.0
CB B:GLU228 4.5 39.3 1.0
CD A:GLU196 4.5 42.6 1.0
CG B:GLU232 4.5 51.8 1.0
CA B:GLU228 4.6 38.5 1.0
MG A:MG401 4.6 46.8 1.0
O B:GLU228 4.9 37.9 1.0
CB B:GLU232 4.9 44.0 1.0

Magnesium binding site 6 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 6 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:45.9
occ:1.00
 OE2 B:GLU196 2.3 43.4 1.0
OD2 B:ASP192 2.3 35.9 1.0
CD B:GLU196 3.2 38.5 1.0
CG B:ASP192 3.3 33.1 1.0
OE1 B:GLU196 3.4 40.2 1.0
OD1 B:ASP192 3.6 35.9 1.0
MG A:MG402 4.2 50.5 1.0
OG A:SER253 4.3 31.7 1.0
NE2 B:HIS109 4.6 51.0 1.0
CG B:GLU196 4.6 38.4 1.0
CB B:ASP192 4.7 32.5 1.0
CD2 B:HIS109 4.7 49.9 1.0
CE1 B:HIS109 4.8 55.3 1.0
CB A:ALA256 5.0 35.4 1.0

Magnesium binding site 7 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 7 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg403

b:56.8
occ:1.00
 OD1 B:ASP116 2.6 63.1 1.0
CG B:ASP116 3.8 56.5 1.0
O B:ILE113 4.0 36.4 1.0
OD2 B:ASP155 4.2 43.2 1.0
CD B:LYS119 4.2 67.3 1.0
OD2 B:ASP116 4.4 68.4 1.0
O B:ILE118 4.4 50.0 1.0
OE1 B:GLN156 4.7 47.0 1.0
CG B:LYS119 4.8 59.9 1.0
CA B:LYS119 4.8 50.0 1.0
CG2 B:ILE113 4.9 29.5 1.0
CB B:ASP116 4.9 54.8 1.0
CA B:ASP116 5.0 51.0 1.0

Magnesium binding site 8 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 8 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg404

b:56.3
occ:1.00
 OD1 B:ASP254 2.1 45.5 1.0
CG B:ASP254 3.3 43.1 1.0
OD2 B:ASP254 3.8 41.9 1.0
O B:TYR250 4.1 44.7 1.0
O B:VAL252 4.2 30.1 1.0
OE1 B:GLU257 4.2 33.2 1.0
N B:ASP254 4.6 36.7 1.0
CB B:ASP254 4.6 38.3 1.0
O A:HOH533 4.7 38.1 1.0
CA B:ASP254 4.7 37.2 1.0
O B:ASN249 4.8 46.3 1.0
C B:TYR250 4.9 37.8 1.0
NH2 A:ARG307 4.9 35.5 1.0

Magnesium binding site 9 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 9 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg405

b:47.2
occ:1.00
 OD1 B:ASN100 1.8 64.7 1.0
O B:ALA75 2.2 48.0 1.0
OD1 B:ASP103 2.6 47.6 1.0
CG B:ASN100 2.8 58.4 1.0
OD2 B:ASP103 2.9 48.8 1.0
CG B:ASP103 3.1 46.2 1.0
ND2 B:ASN100 3.2 63.8 1.0
C B:ALA75 3.3 45.4 1.0
O B:ALA73 3.6 46.0 1.0
O B:ALA72 4.0 47.8 1.0
CB B:ASN100 4.1 55.9 1.0
N B:ALA75 4.2 51.9 1.0
N B:ASP76 4.2 44.8 1.0
OD1 B:ASP76 4.3 51.7 1.0
CA B:ALA75 4.3 47.1 1.0
CA B:ASP76 4.4 40.7 1.0
N B:ASN100 4.4 66.5 1.0
C B:ALA73 4.5 47.9 1.0
CB B:ASP103 4.7 46.4 1.0
C B:TRP74 4.7 48.1 1.0
CA B:ASN100 4.9 59.7 1.0
O B:TRP74 4.9 52.0 1.0
O B:ASN98 5.0 63.3 1.0

Magnesium binding site 10 out of 13 in 6jx2

Go back to Magnesium Binding Sites List in 6jx2
Magnesium binding site 10 out of 13 in the Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Crystal Strcuture of Ketol-Acid Reductoisomerase From Corynebacterium Glutamicum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg401

b:55.8
occ:1.00
 OE2 C:GLU196 2.2 53.5 1.0
OD2 C:ASP192 2.4 56.1 1.0
CD C:GLU196 3.3 52.9 1.0
CG C:ASP192 3.3 52.2 1.0
OD1 C:ASP192 3.5 58.8 1.0
OE1 C:GLU196 3.7 53.7 1.0
OG D:SER253 4.1 47.5 1.0
O2D C:NAP403 4.1 74.0 1.0
C6N C:NAP403 4.5 69.4 1.0
C5N C:NAP403 4.5 71.0 1.0
CG C:GLU196 4.6 50.6 1.0
CE1 C:HIS109 4.6 60.6 1.0
N1N C:NAP403 4.6 72.5 1.0
MG D:MG401 4.7 63.1 1.0
C4N C:NAP403 4.7 75.5 1.0
ND1 C:HIS109 4.7 61.5 1.0
C2N C:NAP403 4.7 76.1 1.0
CB C:ASP192 4.8 51.3 1.0
C3N C:NAP403 4.8 77.6 1.0
NE2 C:HIS109 4.8 59.4 1.0
CB D:SER253 4.9 48.6 1.0
CG C:HIS109 4.9 60.4 1.0
CB D:ALA256 4.9 59.2 1.0
CD2 C:HIS109 5.0 59.5 1.0

Reference:

D.Lee, J.Hong, K.J.Kim. Crystal Structure and Biochemical Characterization of Ketol-Acid Reductoisomerase Fromcorynebacterium Glutamicum. J.Agric.Food Chem. V. 67 8527 2019.
ISSN: ESSN 1520-5118
PubMed: 31298526
DOI: 10.1021/ACS.JAFC.9B03262
Page generated: Tue Oct 1 06:20:12 2024

Last articles

Zn in 9MJ5
Zn in 9HNW
Zn in 9G0L
Zn in 9FNE
Zn in 9DZN
Zn in 9E0I
Zn in 9D32
Zn in 9DAK
Zn in 8ZXC
Zn in 8ZUF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy