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Magnesium in PDB 6nc1: Ftsy-Ng High-Resolution

Protein crystallography data

The structure of Ftsy-Ng High-Resolution, PDB code: 6nc1 was solved by S.F.Ataide, C.Faoro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.99 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.367, 75.980, 108.265, 90.00, 90.30, 90.00
R / Rfree (%) 17 / 20.1

Other elements in 6nc1:

The structure of Ftsy-Ng High-Resolution also contains other interesting chemical elements:

Potassium (K) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Ftsy-Ng High-Resolution (pdb code 6nc1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Ftsy-Ng High-Resolution, PDB code: 6nc1:

Magnesium binding site 1 out of 1 in 6nc1

Go back to Magnesium Binding Sites List in 6nc1
Magnesium binding site 1 out of 1 in the Ftsy-Ng High-Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ftsy-Ng High-Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:20.0
occ:1.00
OG1 A:THR307 2.0 0.5 1.0
O A:HOH621 2.2 20.0 1.0
O A:HOH782 2.2 20.0 1.0
O A:HOH750 2.2 20.0 1.0
O A:HOH609 2.2 20.0 1.0
O1B A:GDP501 2.2 20.0 1.0
H1 A:HOH621 2.8 20.0 1.0
H1 A:HOH782 2.8 20.0 1.0
H1 A:HOH609 2.8 20.0 1.0
H1 A:HOH750 2.8 20.0 1.0
HH12 A:ARG333 3.3 79.2 1.0
CB A:THR307 3.4 61.6 1.0
H A:THR307 3.4 29.1 1.0
PB A:GDP501 3.4 20.0 1.0
HB A:THR307 3.6 73.9 1.0
O2B A:GDP501 3.8 20.0 1.0
HB3 A:LYS306 3.8 28.5 1.0
N A:THR307 3.9 24.3 1.0
NH1 A:ARG333 4.0 66.0 1.0
HH11 A:ARG333 4.1 79.2 1.0
CA A:THR307 4.2 26.2 1.0
OD2 A:ASP382 4.2 90.7 1.0
HD2 A:LYS306 4.3 40.1 1.0
HA A:THR307 4.3 31.5 1.0
OD2 A:ASP330 4.4 32.4 1.0
OD1 A:ASN302 4.4 47.9 1.0
O3B A:GDP501 4.4 20.0 1.0
O A:HOH647 4.4 0.2 1.0
CG2 A:THR307 4.5 59.9 1.0
HG21 A:THR307 4.5 71.9 1.0
O3A A:GDP501 4.5 20.0 1.0
OD1 A:ASP382 4.6 56.2 1.0
PA A:GDP501 4.6 20.0 1.0
HG23 A:THR307 4.6 71.9 1.0
HB1 A:ALA336 4.7 32.3 1.0
O2A A:GDP501 4.7 20.0 1.0
CB A:LYS306 4.8 23.7 1.0
CG A:ASP382 4.8 42.5 1.0
HA A:ASN302 4.9 34.4 1.0
O1A A:GDP501 4.9 20.0 1.0
C A:LYS306 5.0 22.7 1.0
HE3 A:LYS306 5.0 39.3 1.0

Reference:

C.Faoro, S.F.Ataide. Structural Insights Into the G-Loop Dynamics of E. Coli Ftsy Ng Domain. J.Struct.Biol. V. 208 2019.
ISSN: ESSN 1095-8657
PubMed: 31520694
DOI: 10.1016/J.JSB.2019.09.004
Page generated: Tue Oct 1 12:38:24 2024

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