Magnesium in PDB 6yx5: Structure of Drra From Legionella Pneumophilia in Complex with Human RAB8A

The structure of Structure of Drra From Legionella Pneumophilia in Complex with Human RAB8A, PDB code: 6yx5 was solved by S.Schneider, J.Du, M.K.Von Wrisberg, K.Lang, A.Itzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.06 / 2.14
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	142.309, 142.309, 76.616, 90.00, 90.00, 120.00
R / Rfree (%)	20.7 / 23.9

The binding sites of Magnesium atom in the Structure of Drra From Legionella Pneumophilia in Complex with Human RAB8A (pdb code 6yx5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Drra From Legionella Pneumophilia in Complex with Human RAB8A, PDB code: 6yx5:

Magnesium binding site 1 out of 1 in the Structure of Drra From Legionella Pneumophilia in Complex with Human RAB8A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Drra From Legionella Pneumophilia in Complex with Human RAB8A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:29.5 occ:1.00 OG1 A:THR22 2.0 30.5 1.0 OG1 A:THR40 2.1 30.7 1.0 O A:HOH312 2.1 29.4 1.0 O2B A:GNP202 2.1 27.6 1.0 O2G A:GNP202 2.1 28.7 1.0 O A:HOH304 2.1 27.5 1.0 CB A:THR22 3.1 30.1 1.0 CB A:THR40 3.2 31.9 1.0 PG A:GNP202 3.3 32.4 1.0 PB A:GNP202 3.3 30.9 1.0 N3B A:GNP202 3.4 32.8 1.0 N A:THR40 3.7 29.6 1.0 N A:THR22 3.9 29.4 1.0 OD2 A:ASP63 4.0 33.6 1.0 O3G A:GNP202 4.0 30.7 1.0 CA A:THR40 4.0 30.4 1.0 CA A:THR22 4.1 30.2 1.0 O A:HOH301 4.1 33.0 1.0 CG2 A:THR22 4.1 30.0 1.0 OD1 A:ASP63 4.1 34.5 1.0 O2A A:GNP202 4.2 29.5 1.0 CG2 A:THR40 4.3 30.7 1.0 O3A A:GNP202 4.3 32.7 1.0 O1B A:GNP202 4.4 33.2 1.0 CG A:ASP63 4.4 33.2 1.0 O1G A:GNP202 4.5 31.0 1.0 PA A:GNP202 4.6 32.8 1.0 O1A A:GNP202 4.6 30.2 1.0 O A:ILE38 4.6 35.0 1.0 O A:THR64 4.6 32.3 1.0 C A:SER39 4.7 31.2 1.0 CB A:LYS21 5.0 33.9 1.0

J.Du, M.K.Von Wrisberg, B.Gulen, M.Stahl, C.Pett, C.Hedberg, K.Lang, S.Schneider, A.Izen. RAB1-Ampylation By Legionella Drra Is Allosterically Activated By Rab Nat Commun 2020.
ISSN: ESSN 2041-1723