Magnesium in PDB 6nqh: Xanthomonas Citri Dephospho-Pgm in Complex with Xylose-1-Phosphate

The structure of Xanthomonas Citri Dephospho-Pgm in Complex with Xylose-1-Phosphate, PDB code: 6nqh was solved by K.M.Stiers, L.J.Beamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.70 / 1.45
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.863, 54.626, 173.359, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 21.5

The binding sites of Magnesium atom in the Xanthomonas Citri Dephospho-Pgm in Complex with Xylose-1-Phosphate (pdb code 6nqh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Xanthomonas Citri Dephospho-Pgm in Complex with Xylose-1-Phosphate, PDB code: 6nqh:

Magnesium binding site 1 out of 1 in the Xanthomonas Citri Dephospho-Pgm in Complex with Xylose-1-Phosphate


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Xanthomonas Citri Dephospho-Pgm in Complex with Xylose-1-Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:7.6 occ:1.00 OD2 A:ASP237 2.0 9.5 1.0 O2P A:X1P503 2.0 12.5 0.8 OD1 A:ASP239 2.0 10.6 1.0 OD1 A:ASP241 2.1 11.0 1.0 O A:HOH634 2.1 17.8 1.0 CG A:ASP239 2.8 10.0 1.0 OD2 A:ASP239 3.0 14.2 1.0 CG A:ASP237 3.0 8.9 1.0 CG A:ASP241 3.1 10.5 1.0 P A:X1P503 3.2 18.7 0.8 OD2 A:ASP241 3.4 14.3 1.0 OD1 A:ASP237 3.4 8.6 1.0 O3P A:X1P503 3.7 24.1 0.8 O1 A:X1P503 3.7 15.6 0.8 NZ A:LYS107 3.9 17.5 1.0 O A:HOH710 4.0 25.2 1.0 NE A:ARG242 4.1 13.6 1.0 CB A:ASP237 4.2 10.2 1.0 CB A:SER97 4.2 38.8 1.0 CB A:ASP239 4.3 8.7 1.0 N A:ASP241 4.3 8.4 1.0 CB A:ASP241 4.4 6.6 1.0 O1P A:X1P503 4.5 22.6 0.8 CG A:ARG242 4.6 12.5 1.0 O2 A:X1P503 4.6 23.8 0.8 N A:ARG242 4.7 6.2 1.0 OG A:SER97 4.7 41.1 1.0 N A:ASP239 4.7 8.6 1.0 CA A:ASP241 4.8 6.8 1.0 C1 A:X1P503 4.8 16.1 0.8 N A:PHE240 4.8 10.1 1.0 NH2 A:ARG242 4.9 18.0 1.0 CA A:ASP239 4.9 8.4 1.0 C A:ASP239 4.9 9.3 1.0 CD A:ARG242 4.9 12.1 1.0 C A:ASP241 5.0 6.5 1.0 CZ A:ARG242 5.0 11.7 1.0

K.M.Stiers, L.J.Beamer. Substate Dynamics of the Xcpgm Reaction Mechanism To Be Published.