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Magnesium in PDB 6p8c: 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus

Enzymatic activity of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus

All present enzymatic activity of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus:
1.1.1.302;

Protein crystallography data

The structure of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus, PDB code: 6p8c was solved by V.Carbone, L.R.Schofield, I.Hannus, A.J.Sutherland-Smith, R.S.Ronimus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.98 / 2.07
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.921, 89.597, 107.013, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 22.2

Other elements in 6p8c:

The structure of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus (pdb code 6p8c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus, PDB code: 6p8c:

Magnesium binding site 1 out of 1 in 6p8c

Go back to Magnesium Binding Sites List in 6p8c
Magnesium binding site 1 out of 1 in the 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg306

b:57.6
occ:1.00
 O A:HOH464 2.4 53.3 1.0
O B:HOH414 2.4 53.7 1.0
O B:HOH433 2.5 53.0 1.0
O A:HOH447 2.6 54.7 1.0
O B:ARG176 3.0 32.6 1.0
O A:ARG176 3.0 41.0 1.0
C B:ARG176 3.9 35.1 1.0
C A:ARG176 3.9 38.9 1.0
O A:ALA178 4.0 35.8 1.0
O B:ALA178 4.0 38.3 1.0
CG2 B:THR180 4.2 25.5 1.0
CG2 A:THR180 4.3 25.2 1.0
O A:HOH533 4.4 66.2 1.0
CA B:ARG176 4.6 33.7 1.0
CA A:ARG176 4.6 39.8 1.0
OD1 A:ASP183 4.7 36.3 1.0
OD1 B:ASP183 4.7 33.9 1.0
N B:ASP177 4.8 34.3 1.0
O B:GLY175 4.8 26.7 1.0
N A:ASP177 4.8 36.7 1.0
O A:GLY175 4.9 31.5 1.0

Reference:

V.Carbone, L.R.Schofield, I.Hannus, A.J.Sutherland-Smith, R.S.Ronimus. The Crystal Structure of 2,5-Diamino-6-(Ribosylamino)-4(3H)-Pyrimidinone 5'-Phosphate Reductase (Mthred) From Methanothermobacter Thermautotrophicus To Be Published.
Page generated: Wed Aug 13 13:40:06 2025

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