Magnesium in PDB 6syt: Structure of the SMG1-SMG8-SMG9 Complex

All present enzymatic activity of Structure of the SMG1-SMG8-SMG9 Complex:
2.7.11.1;

The binding sites of Magnesium atom in the Structure of the SMG1-SMG8-SMG9 Complex (pdb code 6syt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the SMG1-SMG8-SMG9 Complex, PDB code: 6syt:

Magnesium binding site 1 out of 1 in the Structure of the SMG1-SMG8-SMG9 Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the SMG1-SMG8-SMG9 Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:36.6 occ:1.00 OG C:SER218 1.9 33.2 1.0 OG1 C:THR253 1.9 38.2 1.0 O2B C:ATP601 2.1 35.5 1.0 CB C:SER218 2.9 33.2 1.0 CB C:THR253 3.3 38.2 1.0 OD2 C:ASP269 3.4 34.4 1.0 O1G C:ATP601 3.4 35.5 1.0 PB C:ATP601 3.6 35.5 1.0 N C:THR253 3.7 38.2 1.0 O C:ARG239 3.7 38.7 1.0 CA C:THR253 3.7 38.2 1.0 O3G C:ATP601 4.0 35.5 1.0 PG C:ATP601 4.1 35.5 1.0 CG2 C:THR253 4.1 38.2 1.0 CA C:SER218 4.1 33.2 1.0 O3B C:ATP601 4.2 35.5 1.0 O3A C:ATP601 4.3 35.5 1.0 CG C:ASP269 4.3 34.4 1.0 O1A C:ATP601 4.3 35.5 1.0 N C:SER218 4.4 33.2 1.0 OD1 C:ASP269 4.5 34.4 1.0 C C:GLN252 4.5 40.1 1.0 O1B C:ATP601 4.7 35.5 1.0 PA C:ATP601 4.9 35.5 1.0 O C:THR270 4.9 35.1 1.0 CB C:GLN252 4.9 40.1 1.0 C C:ARG239 4.9 38.7 1.0

Y.Gat, J.M.Schuller, M.Lingaraju, E.Weyher, F.Bonneau, M.Strauss, P.J.Murray, E.Conti. INSP6BINDING to Pikk Kinases Revealed By the Cryo-Em Structure of An SMG1-SMG8-SMG9 Complex. Nat.Struct.Mol.Biol. V. 26 1089 2019.
ISSN: ESSN 1545-9985
PubMed: 31792449
DOI: 10.1038/S41594-019-0342-7