Magnesium in PDB 6u4b: Wbbm Bifunctional Glycosytransferase Apo Structure

The structure of Wbbm Bifunctional Glycosytransferase Apo Structure, PDB code: 6u4b was solved by M.S.Kimber, E.Mallette, E.R.Kamski-Hennekam, R.Gitalis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.28 / 2.10
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	124.030, 124.030, 73.050, 90.00, 90.00, 120.00
R / Rfree (%)	18.8 / 22.7

The binding sites of Magnesium atom in the Wbbm Bifunctional Glycosytransferase Apo Structure (pdb code 6u4b). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Wbbm Bifunctional Glycosytransferase Apo Structure, PDB code: 6u4b:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Wbbm Bifunctional Glycosytransferase Apo Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Wbbm Bifunctional Glycosytransferase Apo Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:38.1 occ:0.33 O A:HOH718 2.1 40.2 1.0 OD1 A:ASN565 2.1 64.0 1.0 CG A:ASN565 3.0 57.6 1.0 ND2 A:ASN565 3.4 56.0 1.0 OE1 A:GLU569 4.2 61.7 1.0 OE2 A:GLU569 4.2 60.0 1.0 CB A:ASN565 4.3 54.4 1.0 N A:ASN565 4.6 44.5 1.0 CA A:ASN565 4.6 44.4 1.0 CD A:GLU569 4.7 60.9 1.0

Magnesium binding site 2 out of 2 in the Wbbm Bifunctional Glycosytransferase Apo Structure


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Wbbm Bifunctional Glycosytransferase Apo Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:35.9 occ:1.00 NE2 A:HIS540 2.1 60.2 1.0 OD2 A:ASP386 2.1 49.8 1.0 OD1 A:ASP388 2.5 47.3 1.0 OD2 A:ASP388 2.7 51.0 1.0 O A:HOH866 2.8 49.5 1.0 CE1 A:HIS540 2.9 58.8 1.0 CG A:ASP388 3.0 48.3 1.0 CG A:ASP386 3.1 44.9 1.0 CD2 A:HIS540 3.1 56.0 1.0 CB A:ASP386 3.5 36.9 1.0 ND1 A:HIS540 4.1 58.0 1.0 OD1 A:ASP386 4.2 45.9 1.0 CG A:HIS540 4.2 55.5 1.0 CB A:ALA542 4.3 69.9 1.0 CB A:ASP388 4.5 46.5 1.0 CA A:ALA542 4.5 71.9 1.0 O A:HOH861 4.9 54.8 1.0 CA A:ASP386 4.9 33.7 1.0 N A:ALA542 5.0 63.9 1.0

B.R.Clarke, B.T.Sweeney, S.D.Kelly, O.G.Ovchinnikova, E.Mallette, T.E.Lowary, M.S.Kimber, C.Whitfield. Structure of the Bifunctional O-Antigen Polymerase From Klebsiella Pneumoniae Reveals A New Family of Galactofuranosyltransferases To Be Published.