Magnesium in PDB 6ut7: Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc (pdb code 6ut7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc, PDB code: 6ut7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg702 b:8.6 occ:1.00 OG1 A:THR222 2.2 12.8 1.0 O3B A:GDP701 2.7 17.3 1.0 OD1 A:ASP356 2.7 7.8 1.0 OD2 A:ASP356 3.1 7.8 1.0 CG A:ASP356 3.2 7.8 1.0 CB A:THR222 3.6 12.8 1.0 CG2 A:THR408 3.8 7.2 1.0 PB A:GDP701 3.9 17.3 1.0 O1B A:GDP701 4.1 17.3 1.0 O1A A:GDP701 4.2 17.3 1.0 CG2 A:THR222 4.3 12.8 1.0 CA A:THR222 4.5 12.8 1.0 N A:THR222 4.5 12.8 1.0 CB A:ASP356 4.7 7.8 1.0 O2B A:GDP701 4.8 17.3 1.0 CB A:THR408 4.9 7.2 1.0 CG A:GLU357 5.0 10.8 1.0 PA A:GDP701 5.0 17.3 1.0

Magnesium binding site 2 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg702 b:6.5 occ:1.00 O1B B:GSP701 2.2 14.5 1.0 O2G B:GSP701 2.2 14.5 1.0 OG1 B:THR222 2.2 8.3 1.0 PB B:GSP701 3.1 14.5 1.0 OD1 B:ASP356 3.1 8.4 1.0 O2B B:GSP701 3.2 14.5 1.0 OD2 B:ASP356 3.2 8.4 1.0 CB B:THR222 3.2 8.3 1.0 PG B:GSP701 3.3 14.5 1.0 CG B:ASP356 3.6 8.4 1.0 O3G B:GSP701 3.6 14.5 1.0 O3B B:GSP701 3.7 14.5 1.0 CG2 B:THR222 4.0 8.3 1.0 OG1 B:THR408 4.0 7.9 1.0 OE2 B:GLU357 4.1 12.2 1.0 OG1 C:THR372 4.1 7.0 1.0 NH2 C:ARG426 4.2 5.2 1.0 CA B:THR222 4.4 8.3 1.0 O3A B:GSP701 4.5 14.5 1.0 CB C:THR372 4.5 7.0 1.0 N B:THR222 4.6 8.3 1.0 S1G B:GSP701 4.8 14.5 1.0 CB B:THR408 4.8 7.9 1.0 O2A B:GSP701 5.0 14.5 1.0

Magnesium binding site 3 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg702 b:1.0 occ:1.00 OG1 C:THR222 2.1 4.8 1.0 OD2 C:ASP356 2.2 4.2 1.0 O2G C:GSP701 2.3 4.8 1.0 O2B C:GSP701 2.4 4.8 1.0 CG C:ASP356 3.0 4.2 1.0 OD1 C:ASP356 3.0 4.2 1.0 CB C:THR222 3.4 4.8 1.0 PB C:GSP701 3.6 4.8 1.0 NH2 D:ARG426 3.6 4.1 1.0 PG C:GSP701 3.6 4.8 1.0 O1B C:GSP701 3.9 4.8 1.0 CG2 C:THR222 4.0 4.8 1.0 O3G C:GSP701 4.1 4.8 1.0 O3B C:GSP701 4.1 4.8 1.0 OG1 C:THR408 4.2 4.6 1.0 CB C:ASP356 4.4 4.2 1.0 CG2 D:THR372 4.5 2.2 1.0 CA C:THR222 4.5 4.8 1.0 CB D:THR372 4.5 2.2 1.0 OE1 C:GLU357 4.6 4.1 1.0 N C:THR222 4.6 4.8 1.0 CG C:GLU357 4.7 4.1 1.0 CZ D:ARG426 4.8 4.1 1.0 CD C:GLU357 4.9 4.1 1.0 O2A C:GSP701 4.9 4.8 1.0 O3A C:GSP701 4.9 4.8 1.0 S1G C:GSP701 4.9 4.8 1.0

Magnesium binding site 4 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg702 b:13.4 occ:1.00 OG1 D:THR222 2.1 4.1 1.0 O2G D:GSP701 2.2 3.7 1.0 OD2 D:ASP356 2.7 13.4 1.0 O2B D:GSP701 2.8 3.7 1.0 OD1 D:ASP356 2.8 13.4 1.0 CG D:ASP356 3.1 13.4 1.0 CB D:THR222 3.4 4.1 1.0 OG1 E:THR372 3.6 4.9 1.0 NH1 E:ARG426 3.6 4.5 1.0 PG D:GSP701 3.7 3.7 1.0 OE2 D:GLU357 3.7 8.3 1.0 OG1 D:THR408 4.0 9.1 1.0 PB D:GSP701 4.0 3.7 1.0 CG2 D:THR222 4.0 4.1 1.0 O3B D:GSP701 4.2 3.7 1.0 CB E:THR372 4.2 4.9 1.0 O3G D:GSP701 4.5 3.7 1.0 CA D:THR222 4.6 4.1 1.0 O1B D:GSP701 4.6 3.7 1.0 N D:THR222 4.6 4.1 1.0 CB D:ASP356 4.6 13.4 1.0 CD D:GLU357 4.7 8.3 1.0 S1G D:GSP701 4.8 3.7 1.0 CZ E:ARG426 4.8 4.5 1.0 CA E:THR372 4.9 4.9 1.0 CG D:GLU357 4.9 8.3 1.0

Magnesium binding site 5 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg702 b:7.8 occ:1.00 OG1 E:THR222 2.1 8.9 1.0 OD1 E:ASP356 2.4 13.4 1.0 O3G E:GSP701 2.5 13.4 1.0 O1B E:GSP701 2.8 13.4 1.0 CG E:ASP356 3.1 13.4 1.0 OD2 E:ASP356 3.2 13.4 1.0 CB E:THR222 3.4 8.9 1.0 OE2 E:GLU357 3.5 10.5 1.0 PB E:GSP701 3.9 13.4 1.0 NH2 F:ARG426 3.9 5.5 1.0 O2B E:GSP701 3.9 13.4 1.0 PG E:GSP701 3.9 13.4 1.0 OG1 E:THR408 4.1 6.2 1.0 CG2 E:THR222 4.1 8.9 1.0 CG2 F:THR372 4.2 3.8 1.0 CG E:GLU357 4.3 10.5 1.0 CD E:GLU357 4.3 10.5 1.0 CA E:THR222 4.5 8.9 1.0 O3B E:GSP701 4.5 13.4 1.0 CB E:ASP356 4.6 13.4 1.0 N E:THR222 4.7 8.9 1.0 O2G E:GSP701 4.7 13.4 1.0 O F:ILE371 4.7 3.6 1.0 CB F:THR372 4.7 3.8 1.0 CA F:THR372 4.9 3.8 1.0 O E:THR408 4.9 6.2 1.0 N E:GLU357 4.9 10.5 1.0

Magnesium binding site 6 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg702 b:6.9 occ:1.00 O2B F:GDP701 2.2 7.7 1.0 OG1 F:THR222 2.2 6.5 1.0 OD1 F:ASP356 3.4 5.5 1.0 PB F:GDP701 3.4 7.7 1.0 CB F:THR222 3.6 6.5 1.0 O3B F:GDP701 3.7 7.7 1.0 OD2 F:ASP356 3.9 5.5 1.0 ND2 F:ASN410 4.0 6.4 1.0 CG F:ASP356 4.1 5.5 1.0 O1B F:GDP701 4.2 7.7 1.0 CG2 F:THR222 4.2 6.5 1.0 OD1 F:ASN410 4.3 6.4 1.0 O2A F:GDP701 4.3 7.7 1.0 OG1 F:THR408 4.4 6.4 1.0 NZ F:LYS221 4.5 5.6 1.0 NH2 A:ARG426 4.6 13.2 1.0 CG F:ASN410 4.6 6.4 1.0 N F:THR222 4.6 6.5 1.0 CA F:THR222 4.6 6.5 1.0 O3A F:GDP701 4.7 7.7 1.0 CG F:GLU357 4.8 5.6 1.0 PA F:GDP701 4.9 7.7 1.0 OE2 A:GLU375 4.9 17.9 1.0 OE2 F:GLU357 4.9 5.6 1.0 O1A F:GDP701 4.9 7.7 1.0

Magnesium binding site 7 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg702 b:8.6 occ:1.00 OG1 H:THR222 2.2 12.8 1.0 O3B H:GDP701 2.6 17.3 1.0 OD1 H:ASP356 2.7 7.8 1.0 OD2 H:ASP356 3.1 7.8 1.0 CG H:ASP356 3.2 7.8 1.0 CB H:THR222 3.6 12.8 1.0 CG2 H:THR408 3.8 7.2 1.0 PB H:GDP701 3.9 17.3 1.0 O1B H:GDP701 4.1 17.3 1.0 O1A H:GDP701 4.2 17.3 1.0 CG2 H:THR222 4.3 12.8 1.0 CA H:THR222 4.5 12.8 1.0 N H:THR222 4.5 12.8 1.0 CB H:ASP356 4.7 7.8 1.0 O2B H:GDP701 4.8 17.3 1.0 CB H:THR408 4.9 7.2 1.0 CG H:GLU357 5.0 10.8 1.0 PA H:GDP701 5.0 17.3 1.0

Magnesium binding site 8 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg702 b:6.5 occ:1.00 O1B I:GSP701 2.2 14.5 1.0 O2G I:GSP701 2.2 14.5 1.0 OG1 I:THR222 2.2 8.3 1.0 PB I:GSP701 3.1 14.5 1.0 OD1 I:ASP356 3.1 8.4 1.0 O2B I:GSP701 3.2 14.5 1.0 OD2 I:ASP356 3.2 8.4 1.0 CB I:THR222 3.2 8.3 1.0 PG I:GSP701 3.3 14.5 1.0 CG I:ASP356 3.6 8.4 1.0 O3G I:GSP701 3.6 14.5 1.0 O3B I:GSP701 3.7 14.5 1.0 CG2 I:THR222 4.0 8.3 1.0 OG1 I:THR408 4.0 7.9 1.0 OE2 I:GLU357 4.1 12.2 1.0 OG1 J:THR372 4.1 7.0 1.0 NH2 J:ARG426 4.2 5.2 1.0 CA I:THR222 4.4 8.3 1.0 O3A I:GSP701 4.5 14.5 1.0 CB J:THR372 4.5 7.0 1.0 N I:THR222 4.6 8.3 1.0 S1G I:GSP701 4.8 14.5 1.0 CB I:THR408 4.8 7.9 1.0 O2A I:GSP701 5.0 14.5 1.0

Magnesium binding site 9 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg702 b:1.0 occ:1.00 OG1 J:THR222 2.1 4.8 1.0 OD2 J:ASP356 2.2 4.2 1.0 O2G J:GSP701 2.3 4.8 1.0 O2B J:GSP701 2.4 4.8 1.0 CG J:ASP356 3.0 4.2 1.0 OD1 J:ASP356 3.0 4.2 1.0 CB J:THR222 3.4 4.8 1.0 PB J:GSP701 3.6 4.8 1.0 NH2 K:ARG426 3.6 4.1 1.0 PG J:GSP701 3.6 4.8 1.0 O1B J:GSP701 3.9 4.8 1.0 CG2 J:THR222 4.0 4.8 1.0 O3G J:GSP701 4.1 4.8 1.0 O3B J:GSP701 4.1 4.8 1.0 OG1 J:THR408 4.2 4.6 1.0 CB J:ASP356 4.4 4.2 1.0 CG2 K:THR372 4.5 2.2 1.0 CA J:THR222 4.5 4.8 1.0 CB K:THR372 4.5 2.2 1.0 OE1 J:GLU357 4.6 4.1 1.0 N J:THR222 4.6 4.8 1.0 CG J:GLU357 4.7 4.1 1.0 CZ K:ARG426 4.8 4.1 1.0 CD J:GLU357 4.9 4.1 1.0 O2A J:GSP701 4.9 4.8 1.0 O3A J:GSP701 4.9 4.8 1.0 S1G J:GSP701 4.9 4.8 1.0

Magnesium binding site 10 out of 12 in the Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Fitted Model For the Tetradecameric Assembly of Thermococcus Gammatolerans Mcrb Aaa+ Hexamers with Bound Mcrc within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg702 b:13.4 occ:1.00 OG1 K:THR222 2.1 4.1 1.0 O2G K:GSP701 2.2 3.7 1.0 OD2 K:ASP356 2.7 13.4 1.0 O2B K:GSP701 2.8 3.7 1.0 OD1 K:ASP356 2.8 13.4 1.0 CG K:ASP356 3.1 13.4 1.0 CB K:THR222 3.4 4.1 1.0 OG1 L:THR372 3.6 4.9 1.0 NH1 L:ARG426 3.6 4.5 1.0 PG K:GSP701 3.7 3.7 1.0 OE2 K:GLU357 3.7 8.3 1.0 OG1 K:THR408 4.0 9.1 1.0 PB K:GSP701 4.0 3.7 1.0 CG2 K:THR222 4.0 4.1 1.0 O3B K:GSP701 4.2 3.7 1.0 CB L:THR372 4.2 4.9 1.0 O3G K:GSP701 4.5 3.7 1.0 CA K:THR222 4.6 4.1 1.0 O1B K:GSP701 4.6 3.7 1.0 N K:THR222 4.6 4.1 1.0 CB K:ASP356 4.6 13.4 1.0 CD K:GLU357 4.7 8.3 1.0 S1G K:GSP701 4.8 3.7 1.0 CZ L:ARG426 4.8 4.5 1.0 CA L:THR372 4.9 4.9 1.0 CG K:GLU357 4.9 8.3 1.0

Y.Niu, H.Suzuki, C.J.Hosford, T.Walz, J.S.Chappie. Structural Asymmetry Governs the Assembly and Gtpase Activity of Mcrbc Restriction Complexes To Be Published.