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Magnesium in PDB 6uy1: Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution

Enzymatic activity of Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution

All present enzymatic activity of Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution:
3.6.4.12;

Protein crystallography data

The structure of Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution, PDB code: 6uy1 was solved by P.Stavropoulos, A.Hoelz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.95 / 2.21
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 76.279, 76.281, 98.443, 90.00, 96.65, 90.00
R / Rfree (%) 18.4 / 22.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution (pdb code 6uy1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution, PDB code: 6uy1:

Magnesium binding site 1 out of 1 in 6uy1

Go back to Magnesium Binding Sites List in 6uy1
Magnesium binding site 1 out of 1 in the Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg201

b:43.4
occ:1.00
 O E:HOH350 2.0 56.7 1.0
O E:ARG100 2.5 48.3 1.0
O E:HOH343 2.5 51.7 1.0
O E:HOH321 2.6 54.5 1.0
O E:HOH308 2.6 44.2 1.0
O E:HOH329 2.7 48.4 1.0
HB2 H:SER129 2.8 0.5 1.0
O H:SER128 2.9 99.8 1.0
HA E:PHE101 3.2 59.0 1.0
HE1 E:TYR110 3.3 60.3 1.0
C E:ARG100 3.6 53.1 1.0
HB3 H:SER128 3.6 0.3 1.0
CB H:SER129 3.7 0.9 1.0
C H:SER128 3.8 96.8 1.0
HB3 E:ARG100 4.0 67.1 1.0
CA E:PHE101 4.1 49.2 1.0
O H:HOH218 4.1 58.8 1.0
HB3 H:SER129 4.2 0.5 1.0
CE1 E:TYR110 4.2 50.2 1.0
N E:PHE101 4.3 50.4 1.0
OG H:SER129 4.4 0.2 1.0
CB H:SER128 4.4 91.9 1.0
O H:HOH256 4.4 64.2 1.0
O E:PHE101 4.5 46.0 1.0
HB2 H:SER128 4.5 0.3 1.0
HA H:SER129 4.5 0.5 1.0
N H:SER129 4.5 0.3 1.0
CA H:SER129 4.5 0.0 1.0
O E:HOH352 4.6 57.0 1.0
C E:PHE101 4.6 43.9 1.0
O H:HOH225 4.6 62.9 1.0
CA E:ARG100 4.6 52.7 1.0
CA H:SER128 4.7 91.1 1.0
O E:ASN103 4.7 50.5 1.0
HA E:ARG100 4.7 63.3 1.0
OH E:TYR110 4.7 53.7 1.0
CB E:ARG100 4.8 55.9 1.0
HB2 E:GLU105 4.8 83.8 1.0
O E:HOH322 4.8 55.6 1.0
HA H:SER128 4.9 0.3 1.0
HD1 E:TYR110 5.0 56.0 1.0
O E:HOH340 5.0 65.9 1.0
CZ E:TYR110 5.0 55.1 1.0

Reference:

P.Stavropoulos, A.Hoelz. Crystal Structure of the STH1 Bromodomain From Saccharomyces Cerevisiae at 2.2 Angstrom Resolution To Be Published.
Page generated: Wed Aug 13 18:45:43 2025

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