Magnesium in PDB 6wvr: Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule

The binding sites of Magnesium atom in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule (pdb code 6wvr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule, PDB code: 6wvr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:19.4 occ:1.00 O2B A:GTP501 2.0 18.9 1.0 O1G A:GTP501 2.0 19.4 1.0 O2G A:GTP501 2.2 19.6 1.0 PG A:GTP501 2.3 18.6 1.0 PB A:GTP501 2.7 19.1 1.0 O3B A:GTP501 2.8 17.3 1.0 HG1 A:THR145 3.3 0.0 1.0 H A:GLN11 3.4 0.0 1.0 O1B A:GTP501 3.4 20.5 1.0 HZ2 B:LYS254 3.5 0.0 1.0 HB A:THR145 3.6 0.0 1.0 O3G A:GTP501 3.7 20.2 1.0 HZ1 B:LYS254 3.9 0.0 1.0 HB2 A:GLN11 3.9 0.0 1.0 OD1 A:ASP69 3.9 0.0 1.0 OG1 A:THR145 4.0 0.0 1.0 H A:THR145 4.0 0.0 1.0 HA2 A:GLY10 4.1 0.0 1.0 NZ B:LYS254 4.1 0.0 1.0 HG2 A:GLU71 4.1 0.0 1.0 O3A A:GTP501 4.1 19.1 1.0 N A:GLN11 4.2 0.0 1.0 HZ3 B:LYS254 4.3 0.0 1.0 CB A:THR145 4.3 0.0 1.0 HB3 A:GLN11 4.4 0.0 1.0 HG3 A:GLU71 4.5 0.0 1.0 HA3 A:GLY10 4.5 0.0 1.0 H A:ALA99 4.5 0.0 1.0 CB A:GLN11 4.6 0.0 1.0 HB1 A:ALA99 4.6 0.0 1.0 CA A:GLY10 4.7 0.0 1.0 O1A A:GTP501 4.7 21.9 1.0 HD21 A:ASN101 4.7 0.0 1.0 PA A:GTP501 4.7 20.1 1.0 H A:GLY144 4.8 0.0 1.0 CG A:ASP69 4.8 0.0 1.0 CG A:GLU71 4.8 0.0 1.0 H A:GLY146 4.8 0.0 1.0 OD2 A:ASP69 4.8 0.0 1.0 OD1 A:ASP98 4.9 0.0 1.0 OE1 A:GLU71 4.9 0.0 1.0 N A:THR145 4.9 0.0 1.0 C A:GLY10 4.9 0.0 1.0 HD22 A:ASN101 4.9 0.0 1.0

Magnesium binding site 2 out of 2 in the Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Tubulin Dimers From A 13-Protofilament, Taxol Stabilized Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:19.4 occ:1.00 O2B C:GTP501 2.0 18.9 1.0 O1G C:GTP501 2.0 19.4 1.0 O2G C:GTP501 2.2 19.6 1.0 PG C:GTP501 2.3 18.6 1.0 PB C:GTP501 2.7 19.1 1.0 O3B C:GTP501 2.8 17.3 1.0 HG1 C:THR145 3.3 0.0 1.0 H C:GLN11 3.4 0.0 1.0 O1B C:GTP501 3.4 20.5 1.0 HZ2 D:LYS254 3.5 0.0 1.0 HB C:THR145 3.6 0.0 1.0 O3G C:GTP501 3.7 20.2 1.0 HZ1 D:LYS254 3.9 0.0 1.0 HB2 C:GLN11 3.9 0.0 1.0 OD1 C:ASP69 3.9 0.0 1.0 OG1 C:THR145 4.0 0.0 1.0 H C:THR145 4.0 0.0 1.0 HA2 C:GLY10 4.1 0.0 1.0 NZ D:LYS254 4.1 0.0 1.0 HG2 C:GLU71 4.1 0.0 1.0 O3A C:GTP501 4.1 19.1 1.0 N C:GLN11 4.2 0.0 1.0 HZ3 D:LYS254 4.3 0.0 1.0 CB C:THR145 4.3 0.0 1.0 HB3 C:GLN11 4.4 0.0 1.0 HG3 C:GLU71 4.5 0.0 1.0 HA3 C:GLY10 4.5 0.0 1.0 H C:ALA99 4.5 0.0 1.0 CB C:GLN11 4.6 0.0 1.0 HB1 C:ALA99 4.6 0.0 1.0 CA C:GLY10 4.7 0.0 1.0 O1A C:GTP501 4.7 21.9 1.0 HD21 C:ASN101 4.7 0.0 1.0 PA C:GTP501 4.7 20.1 1.0 H C:GLY144 4.8 0.0 1.0 CG C:ASP69 4.8 0.0 1.0 CG C:GLU71 4.8 0.0 1.0 H C:GLY146 4.8 0.0 1.0 OD2 C:ASP69 4.8 0.0 1.0 OD1 C:ASP98 4.9 0.0 1.0 OE1 C:GLU71 4.9 0.0 1.0 N C:THR145 4.9 0.0 1.0 C C:GLY10 4.9 0.0 1.0 HD22 C:ASN101 4.9 0.0 1.0

G.E.Debs, M.Cha, X.Liu, A.R.Huehn, C.V.Sindelar. Dynamic and Asymmetric Fluctuations in the Microtubule Wall Captured By High-Resolution Cryo-Electron Microscopy To Be Published.