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Magnesium in PDB 6wwg: KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule

Other elements in 6wwg:

The structure of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Aluminium (Al) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule (pdb code 6wwg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule, PDB code: 6wwg:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6wwg

Go back to Magnesium Binding Sites List in 6wwg
Magnesium binding site 1 out of 3 in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg802

b:92.6
occ:1.00
OG K:SER489 2.0 95.1 1.0
O2B K:ADP801 2.0 96.9 1.0
F3 K:AF3800 2.1 92.4 1.0
OG K:SER603 2.6 88.6 1.0
CB K:SER603 3.1 88.6 1.0
CB K:SER489 3.2 95.1 1.0
PB K:ADP801 3.5 96.9 1.0
OD2 K:ASP638 3.7 87.3 1.0
AL K:AF3800 3.7 92.4 1.0
O2A K:ADP801 3.9 96.9 1.0
N K:SER603 4.1 88.6 1.0
CA K:SER603 4.2 88.6 1.0
N K:SER489 4.2 95.1 1.0
CA K:SER489 4.3 95.1 1.0
O3A K:ADP801 4.3 96.9 1.0
O3B K:ADP801 4.3 96.9 1.0
O1B K:ADP801 4.4 96.9 1.0
NH2 K:ARG591 4.4 89.9 1.0
CG K:ASP638 4.4 87.3 1.0
OD1 K:ASP638 4.4 87.3 1.0
NH1 K:ARG591 4.5 89.9 1.0
F2 K:AF3800 4.5 92.4 1.0
PA K:ADP801 4.6 96.9 1.0
O K:LEU639 4.7 80.8 1.0
CZ K:ARG591 4.8 89.9 1.0
F1 K:AF3800 4.9 92.4 1.0

Magnesium binding site 2 out of 3 in 6wwg

Go back to Magnesium Binding Sites List in 6wwg
Magnesium binding site 2 out of 3 in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:48.4
occ:1.00
O1G A:GTP501 2.0 51.9 1.0
O1B A:GTP501 2.4 51.9 1.0
OD2 A:ASP98 3.2 53.6 1.0
PG A:GTP501 3.2 51.9 1.0
OE2 A:GLU71 3.4 54.5 1.0
O3G A:GTP501 3.5 51.9 1.0
OE1 A:GLN11 3.6 51.3 1.0
PB A:GTP501 3.6 51.9 1.0
OD1 A:ASP69 3.8 53.0 1.0
NZ B:LYS252 3.8 48.0 1.0
O3B A:GTP501 3.9 51.9 1.0
CG A:ASP98 3.9 53.6 1.0
OD1 A:ASP98 4.0 53.6 1.0
CB A:GLN11 4.0 51.3 1.0
O2B A:GTP501 4.2 51.9 1.0
OD2 A:ASP69 4.2 53.0 1.0
CD A:GLU71 4.2 54.5 1.0
O1A A:GTP501 4.4 51.9 1.0
CG A:ASP69 4.4 53.0 1.0
O2G A:GTP501 4.4 51.9 1.0
CD A:GLN11 4.5 51.3 1.0
OE1 A:GLU71 4.7 54.5 1.0
N A:GLN11 4.7 51.3 1.0
CE B:LYS252 4.9 48.0 1.0
CB A:GLU71 4.9 54.5 1.0
O3A A:GTP501 4.9 51.9 1.0
O B:ASN247 4.9 51.3 1.0
CG A:GLN11 4.9 51.3 1.0

Magnesium binding site 3 out of 3 in 6wwg

Go back to Magnesium Binding Sites List in 6wwg
Magnesium binding site 3 out of 3 in the KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of KIF14[391-772] Dimer Two-Heads-Bound State - Adp-Alfx in Complex with A Microtubule within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:42.4
occ:1.00
O3G E:GTP501 2.0 48.1 1.0
O1B E:GTP501 2.7 48.1 1.0
OE1 E:GLU71 2.7 52.2 1.0
OD2 E:ASP98 3.0 50.7 1.0
PG E:GTP501 3.2 48.1 1.0
O1G E:GTP501 3.5 48.1 1.0
PB E:GTP501 3.7 48.1 1.0
O3B E:GTP501 3.8 48.1 1.0
CG E:ASP98 3.9 50.7 1.0
CD E:GLU71 4.0 52.2 1.0
O3A E:GTP501 4.0 48.1 1.0
OD1 E:ASP98 4.1 50.7 1.0
OE1 E:GLN11 4.1 46.9 1.0
O1A E:GTP501 4.3 48.1 1.0
CB E:GLN11 4.3 46.9 1.0
NZ I:LYS252 4.3 48.4 1.0
O2G E:GTP501 4.4 48.1 1.0
N E:GLN11 4.5 46.9 1.0
CB E:GLU71 4.6 52.2 1.0
PA E:GTP501 4.7 48.1 1.0
OE2 E:GLU71 4.7 52.2 1.0
O E:ASP69 4.8 49.5 1.0
CD E:GLN11 4.9 46.9 1.0
CG E:GLU71 4.9 52.2 1.0

Reference:

M.P.M.H.Benoit, A.B.Asenjo, M.Paydar, S.Dhakal, B.Kwok, H.Sosa. Structural Basis of Mechano-Chemical Coupling By the Mitotic Kinesin KIF14 To Be Published.
Page generated: Tue Oct 1 23:17:10 2024

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