Magnesium in PDB 6x70: REV1-Dna Binary Complex

The structure of REV1-Dna Binary Complex, PDB code: 6x70 was solved by T.M.Weaver, B.D.Freudenthal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.49 / 2.05
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	62.212, 73.916, 117.617, 90.00, 90.00, 90.00
R / Rfree (%)	21 / 26.1

The binding sites of Magnesium atom in the REV1-Dna Binary Complex (pdb code 6x70). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the REV1-Dna Binary Complex, PDB code: 6x70:

Magnesium binding site 1 out of 1 in the REV1-Dna Binary Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of REV1-Dna Binary Complex within 5.0Å range: probe atom residue distance (Å) B Occ P:Mg801 b:37.0 occ:1.00 O P:HOH916 2.1 30.0 1.0 O A:HOH907 2.1 38.7 1.0 O A:ASP548 2.4 21.8 1.0 O A:VAL553 2.4 26.2 1.0 OP1 P:DA11 2.6 33.6 1.0 O A:LEU550 3.0 24.3 1.0 C A:VAL553 3.4 25.4 1.0 C A:ASP548 3.4 23.4 1.0 P P:DA11 3.5 34.7 1.0 OP2 P:DA11 3.5 32.2 1.0 O A:HOH1013 3.8 29.3 1.0 N A:VAL553 3.9 22.4 1.0 CA A:ASP548 4.0 26.4 1.0 C A:LEU550 4.1 29.2 1.0 CB A:ASP548 4.1 26.8 1.0 CA A:VAL553 4.1 21.4 1.0 N A:GLY554 4.3 24.5 1.0 NH2 A:ARG518 4.4 43.7 1.0 C A:ASP549 4.4 23.1 1.0 N A:ASP549 4.5 17.9 1.0 O3' P:DT10 4.5 32.1 1.0 N A:LEU550 4.5 25.3 1.0 CB A:VAL553 4.5 27.5 1.0 O A:HOH1202 4.5 40.6 1.0 N A:GLY552 4.5 28.9 1.0 CA A:ASP549 4.6 26.4 1.0 CA A:GLY554 4.6 25.5 1.0 O5' P:DA11 4.7 30.4 1.0 O A:ASP549 4.7 26.7 1.0 C A:GLY552 4.9 26.8 1.0 CA A:PRO551 4.9 32.4 1.0 CA A:LEU550 4.9 32.1 1.0 N A:PRO551 5.0 30.7 1.0

T.M.Weaver, L.M.Cortez, T.H.Khoang, M.T.Washington, P.K.Agarwal, B.D.Freudenthal. Visualizing REV1 Catalyze Protein-Template Dna Synthesis. Proc.Natl.Acad.Sci.Usa V. 117 25494 2020.
ISSN: ESSN 1091-6490
PubMed: 32999062
DOI: 10.1073/PNAS.2010484117