Magnesium in PDB 6y2z: Ng Domain of Human SRP54

The structure of Ng Domain of Human SRP54, PDB code: 6y2z was solved by K.D.Juaire, K.Wild, I.Sinning, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.37 / 2.15
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.443, 87.668, 170.504, 90.00, 90.00, 90.00
R / Rfree (%)	20.2 / 24.6

The binding sites of Magnesium atom in the Ng Domain of Human SRP54 (pdb code 6y2z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Ng Domain of Human SRP54, PDB code: 6y2z:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Ng Domain of Human SRP54


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Ng Domain of Human SRP54 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:46.2 occ:1.00 O A:LYS85 2.4 46.3 1.0 O A:ASP88 2.7 42.7 1.0 O A:HOH464 2.8 50.1 1.0 O A:HOH527 3.3 69.1 1.0 C A:LYS85 3.5 42.5 1.0 C A:ASP88 3.9 43.9 1.0 O A:HOH477 4.1 47.0 1.0 CA A:LYS85 4.2 47.0 1.0 N A:ASP88 4.4 39.6 1.0 CB A:LYS85 4.4 50.6 1.0 N A:LEU86 4.5 41.0 1.0 CA A:LEU86 4.5 40.6 1.0 CA A:ASP88 4.5 40.2 1.0 C A:LEU86 4.6 45.5 1.0 O A:LEU86 4.6 44.0 1.0 CB A:ASP88 4.7 45.8 1.0 O A:ALA264 4.8 43.8 1.0 N A:PRO89 4.9 42.9 1.0 CB A:ALA264 4.9 39.1 1.0 C A:PRO89 4.9 46.2 1.0 N A:GLY90 5.0 42.7 1.0 CA A:PRO89 5.0 41.9 1.0

Magnesium binding site 2 out of 2 in the Ng Domain of Human SRP54


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Ng Domain of Human SRP54 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg302 b:56.7 occ:1.00 O B:HOH430 2.5 51.3 1.0 O B:LYS85 2.6 44.8 1.0 O B:ASP88 2.9 46.8 1.0 C B:LYS85 3.7 41.0 1.0 C B:ASP88 4.0 47.0 1.0 O B:HOH446 4.1 34.2 1.0 CA B:LYS85 4.4 42.5 1.0 O B:ALA264 4.4 41.2 1.0 N B:ASP88 4.5 43.1 1.0 N B:LEU86 4.7 35.6 1.0 O B:LEU86 4.7 39.1 1.0 CB B:LYS85 4.7 50.3 1.0 CA B:ASP88 4.7 44.2 1.0 CB B:ALA264 4.7 37.4 1.0 C B:LEU86 4.8 38.8 1.0 CA B:LEU86 4.8 37.6 1.0 CB B:ASP88 4.9 51.8 1.0 C B:ALA264 4.9 34.9 1.0 N B:PRO89 5.0 46.7 1.0 C B:PRO89 5.0 49.3 1.0

K.D.Juaire, I.Sinning. Ng Domain of Human SRP54 To Be Published.