Atomistry » Magnesium » PDB 7b1l-7bdi » 7b7z
Atomistry »
  Magnesium »
    PDB 7b1l-7bdi »
      7b7z »

Magnesium in PDB 7b7z: Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1)

Enzymatic activity of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1)

All present enzymatic activity of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1):
3.6.4.10;

Protein crystallography data

The structure of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1), PDB code: 7b7z was solved by L.A.Perera, D.Ron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 74.25 / 1.70
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.371, 104.076, 105.629, 90, 90, 90
R / Rfree (%) 19.5 / 22.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1) (pdb code 7b7z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1), PDB code: 7b7z:

Magnesium binding site 1 out of 1 in 7b7z

Go back to Magnesium Binding Sites List in 7b7z
Magnesium binding site 1 out of 1 in the Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg500

b:32.5
occ:0.60
O B:HOH964 2.1 29.2 1.0
O B:HOH705 2.1 29.3 1.0
O1P B:AMP600 2.1 32.5 1.0
O A:HOH875 2.1 29.0 1.0
O B:HOH792 2.1 28.6 1.0
OD1 A:ASP367 2.1 28.0 1.0
CG A:ASP367 3.1 26.7 1.0
P B:AMP600 3.4 30.1 1.0
OD2 A:ASP367 3.6 28.6 1.0
CB B:THR518 3.8 30.7 1.0
OG1 B:THR518 3.9 29.8 1.0
O2P B:AMP600 4.0 31.1 1.0
N B:THR518 4.0 28.9 1.0
O A:HOH972 4.1 46.0 1.0
O B:THR518 4.2 31.7 1.0
NH2 A:ARG371 4.3 23.7 1.0
O A:HOH602 4.3 18.5 1.0
O A:HOH819 4.3 41.1 1.0
O A:HOH827 4.4 49.7 1.0
CA B:THR518 4.4 30.1 1.0
CB A:ASP367 4.4 25.9 1.0
O B:HOH1196 4.4 39.8 1.0
N A:GLY368 4.5 22.3 1.0
OE1 A:GLU234 4.5 32.1 1.0
O A:HOH991 4.6 52.8 1.0
O5' B:AMP600 4.6 28.6 1.0
O B:HOH1053 4.6 40.9 1.0
CA A:ASP367 4.7 24.1 1.0
C B:THR518 4.8 31.4 1.0
C5' B:AMP600 4.8 26.8 1.0
CG2 B:THR518 5.0 31.4 1.0

Reference:

L.A.Perera, D.Ron. Structures of A Deampylation Complex Rationalise the Switch Between Antagonistic Catalytic Activities of Ficd Nat Commun 2021.
ISSN: ESSN 2041-1723
Page generated: Wed Oct 2 10:20:37 2024

Last articles

Ca in 6GW9
Ca in 6GUZ
Ca in 6GXZ
Ca in 6GSZ
Ca in 6GHV
Ca in 6GTW
Ca in 6GUY
Ca in 6GUX
Ca in 6GRW
Ca in 6GRR
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy