Magnesium in PDB 7b7z: Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1)

All present enzymatic activity of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1):
3.6.4.10;

The structure of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1), PDB code: 7b7z was solved by L.A.Perera, D.Ron, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	74.25 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	95.371, 104.076, 105.629, 90, 90, 90
R / Rfree (%)	19.5 / 22.1

The binding sites of Magnesium atom in the Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1) (pdb code 7b7z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1), PDB code: 7b7z:

Magnesium binding site 1 out of 1 in the Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Deampylation Complex of Monomeric Ficd and Ampylated Bip (State 1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg500 b:32.5 occ:0.60 O B:HOH964 2.1 29.2 1.0 O B:HOH705 2.1 29.3 1.0 O1P B:AMP600 2.1 32.5 1.0 O A:HOH875 2.1 29.0 1.0 O B:HOH792 2.1 28.6 1.0 OD1 A:ASP367 2.1 28.0 1.0 CG A:ASP367 3.1 26.7 1.0 P B:AMP600 3.4 30.1 1.0 OD2 A:ASP367 3.6 28.6 1.0 CB B:THR518 3.8 30.7 1.0 OG1 B:THR518 3.9 29.8 1.0 O2P B:AMP600 4.0 31.1 1.0 N B:THR518 4.0 28.9 1.0 O A:HOH972 4.1 46.0 1.0 O B:THR518 4.2 31.7 1.0 NH2 A:ARG371 4.3 23.7 1.0 O A:HOH602 4.3 18.5 1.0 O A:HOH819 4.3 41.1 1.0 O A:HOH827 4.4 49.7 1.0 CA B:THR518 4.4 30.1 1.0 CB A:ASP367 4.4 25.9 1.0 O B:HOH1196 4.4 39.8 1.0 N A:GLY368 4.5 22.3 1.0 OE1 A:GLU234 4.5 32.1 1.0 O A:HOH991 4.6 52.8 1.0 O5' B:AMP600 4.6 28.6 1.0 O B:HOH1053 4.6 40.9 1.0 CA A:ASP367 4.7 24.1 1.0 C B:THR518 4.8 31.4 1.0 C5' B:AMP600 4.8 26.8 1.0 CG2 B:THR518 5.0 31.4 1.0

L.A.Perera, D.Ron. Structures of A Deampylation Complex Rationalise the Switch Between Antagonistic Catalytic Activities of Ficd Nat Commun 2021.
ISSN: ESSN 2041-1723