Atomistry » Magnesium » PDB 7b1l-7bdi » 7b9p
Atomistry »
  Magnesium »
    PDB 7b1l-7bdi »
      7b9p »

Magnesium in PDB 7b9p: Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides

Enzymatic activity of Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides

All present enzymatic activity of Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides:
1.17.4.1;

Protein crystallography data

The structure of Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides, PDB code: 7b9p was solved by P.Wilk, C.Feiler, C.Loderer, F.Kabinger, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.86 / 2.65
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 140.748, 140.748, 364.277, 90, 90, 120
R / Rfree (%) 23 / 27.2

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides (pdb code 7b9p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides, PDB code: 7b9p:

Magnesium binding site 1 out of 1 in 7b9p

Go back to Magnesium Binding Sites List in 7b9p
Magnesium binding site 1 out of 1 in the Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Ribonucleotide Reductase From Rhodobacter Sphaeroides within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1002

b:121.2
occ:1.00
O1A A:DTP1001 2.0 123.7 0.9
O3G A:DTP1001 2.2 133.2 0.9
O1G A:DTP1001 2.3 143.1 0.9
PG A:DTP1001 2.7 129.7 0.9
O A:HOH1137 3.0 96.3 1.0
PA A:DTP1001 3.3 122.9 0.9
OG A:SER246 3.6 161.3 1.0
O5' A:DTP1001 3.7 104.9 0.9
O3B A:DTP1001 3.8 146.4 0.9
O2G A:DTP1001 3.9 120.1 0.9
CD1 A:LEU245 3.9 114.2 1.0
O3A A:DTP1001 4.1 144.5 0.9
O2B A:DTP1001 4.2 147.4 0.9
CB A:LEU245 4.2 120.8 1.0
PB A:DTP1001 4.4 147.5 0.9
N A:GLY247 4.5 156.4 1.0
O2A A:DTP1001 4.5 118.7 0.9
CG A:LEU245 4.5 116.5 1.0
C8 A:DTP1001 4.6 101.8 0.9
N A:SER246 4.7 140.2 1.0
CB A:SER246 4.8 150.6 1.0
CD2 A:LEU245 4.9 98.7 1.0
N7 A:DTP1001 4.9 102.6 0.9
C A:LEU245 5.0 122.9 1.0

Reference:

T.Fietze, P.Wilk, F.Kabinger, S.Anoosheh, A.Hofer, D.Lundin, C.G.Feiler, M.S.Weiss, C.Loderer. Hug Domain Is Responsible For Active Dimer Stabilization in An Nrdjd Ribonucleotide Reductase. Biochemistry V. 61 1633 2022.
ISSN: ISSN 0006-2960
PubMed: 35856337
DOI: 10.1021/ACS.BIOCHEM.2C00173
Page generated: Wed Oct 2 10:22:08 2024

Last articles

Mg in 4JI1
Mg in 4JI0
Mg in 4JI2
Mg in 4JI3
Mg in 4JHD
Mg in 4JH6
Mg in 4JH8
Mg in 4JH7
Mg in 4JH3
Mg in 4JH5
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy