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Magnesium in PDB 7ctt: Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.

Enzymatic activity of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.

All present enzymatic activity of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.:
2.7.7.48;

Other elements in 7ctt:

The structure of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. also contains other interesting chemical elements:

Fluorine (F) 1 atom
Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. (pdb code 7ctt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State., PDB code: 7ctt:

Magnesium binding site 1 out of 1 in 7ctt

Go back to Magnesium Binding Sites List in 7ctt
Magnesium binding site 1 out of 1 in the Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1003

b:46.7
occ:1.00
OD1 A:ASP761 2.1 46.5 1.0
CG A:ASP761 3.2 46.5 1.0
O A:GLU811 3.4 45.0 1.0
O A:TRP617 3.6 50.7 1.0
NE1 A:TRP800 3.9 48.4 1.0
CB A:ASP761 4.0 46.5 1.0
OD2 A:ASP761 4.0 46.5 1.0
C A:GLU811 4.2 45.0 1.0
CA A:ASP761 4.3 46.5 1.0
C A:TRP617 4.3 50.7 1.0
CA A:PHE812 4.4 42.1 1.0
N A:TRP617 4.5 50.7 1.0
N A:ALA762 4.6 47.3 1.0
CG A:ASP618 4.6 55.2 1.0
N A:PHE812 4.7 42.1 1.0
OD2 A:ASP618 4.7 55.2 1.0
CB A:ASP618 4.7 55.2 1.0
N A:CYS813 4.8 46.9 1.0
CE2 A:TRP800 4.8 48.4 1.0
CB A:GLU811 4.8 45.0 1.0
CD1 A:TRP800 4.9 48.4 1.0
O A:ALA762 4.9 47.3 1.0
CG A:GLU811 4.9 45.0 1.0
CZ2 A:TRP800 5.0 48.4 1.0
OD1 A:ASP618 5.0 55.2 1.0
C A:ASP761 5.0 46.5 1.0

Reference:

Q.Peng, R.Peng, S.Yi. Cryo-Em Structure of Favipiravir Bound to Replicating Polymerase Complex of Sars-Cov-2 in the Pre-Catalytic State. To Be Published.
Page generated: Wed Oct 2 14:19:52 2024

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