Magnesium in PDB 7n70: Cryo-Em Structure of ATP13A2 in the Bef-Bound E2P-Like State

The structure of Cryo-Em Structure of ATP13A2 in the Bef-Bound E2P-Like State also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of ATP13A2 in the Bef-Bound E2P-Like State (pdb code 7n70). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Structure of ATP13A2 in the Bef-Bound E2P-Like State, PDB code: 7n70:

Magnesium binding site 1 out of 1 in the Cryo-Em Structure of ATP13A2 in the Bef-Bound E2P-Like State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of ATP13A2 in the Bef-Bound E2P-Like State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1202 b:30.8 occ:1.00 OD2 A:ASP508 2.1 31.7 1.0 F1 A:BEF1201 2.2 32.4 1.0 O A:THR510 2.2 30.4 1.0 OD1 A:ASP873 2.2 36.1 1.0 CG A:ASP873 3.1 36.1 1.0 CG A:ASP508 3.3 31.7 1.0 OD2 A:ASP873 3.4 36.1 1.0 C A:THR510 3.4 30.4 1.0 BE A:BEF1201 3.6 32.4 1.0 O A:SER338 3.8 32.3 1.0 OD1 A:ASP508 3.9 31.7 1.0 N A:GLY874 3.9 37.0 1.0 OD2 A:ASP877 4.0 36.6 1.0 N A:GLY511 4.3 31.2 1.0 OG1 A:THR512 4.3 31.9 1.0 CA A:THR510 4.3 30.4 1.0 CA A:GLY874 4.3 37.0 1.0 CA A:GLY511 4.3 31.2 1.0 CB A:ASP873 4.4 36.1 1.0 C A:ASP873 4.4 36.1 1.0 N A:ASP873 4.4 36.1 1.0 CB A:ASP508 4.5 31.7 1.0 F3 A:BEF1201 4.5 32.4 1.0 CB A:THR510 4.5 30.4 1.0 N A:THR510 4.5 30.4 1.0 F2 A:BEF1201 4.6 32.4 1.0 OD1 A:ASN876 4.6 34.4 1.0 CA A:ASP873 4.6 36.1 1.0 C A:GLY511 4.7 31.2 1.0 N A:THR512 4.8 31.9 1.0 C A:SER338 4.9 32.3 1.0

S.I.Sim, S.Von Bulow, G.Hummer, E.Park. Structural Basis of Polyamine Transport By Human ATP13A2 (PARK9). Mol.Cell 2021.
ISSN: ISSN 1097-2765
PubMed: 34715013
DOI: 10.1016/J.MOLCEL.2021.08.017