Magnesium in PDB 7plz: Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)

The structure of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) also contains other interesting chemical elements:

Bromine

(Br)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) (pdb code 7plz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin), PDB code: 7plz:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg403 b:25.8 occ:1.00 NE2 C:GLN137 2.7 27.3 1.0 O3 C:PO4402 2.7 31.8 1.0 O2B C:ADP401 3.0 26.2 1.0 O3B C:ADP401 3.0 26.2 1.0 PB C:ADP401 3.5 26.2 1.0 CD C:GLN137 3.5 27.3 1.0 O2A C:ADP401 3.9 26.2 1.0 OE1 C:GLN137 4.0 27.3 1.0 P C:PO4402 4.1 31.8 1.0 OD2 C:ASP11 4.2 30.5 1.0 CG C:GLN137 4.5 27.3 1.0 OD1 C:ASP11 4.5 30.5 1.0 O1 C:PO4402 4.6 31.8 1.0 O1B C:ADP401 4.6 26.2 1.0 OD1 C:ASP154 4.6 24.2 1.0 O2 C:PO4402 4.6 31.8 1.0 O3A C:ADP401 4.7 26.2 1.0 CG2 C:VAL339 4.7 24.4 1.0 CG C:ASP11 4.8 30.5 1.0 PA C:ADP401 4.9 26.2 1.0 O C:ASN12 4.9 32.9 1.0 CB C:VAL339 5.0 24.4 1.0

Magnesium binding site 2 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg403 b:25.5 occ:1.00 O3 F:PO4402 2.4 34.0 1.0 NE2 F:GLN137 2.5 28.0 1.0 O3B F:ADP401 2.5 29.4 1.0 O2B F:ADP401 3.1 29.4 1.0 PB F:ADP401 3.3 29.4 1.0 CD F:GLN137 3.4 28.0 1.0 OE1 F:GLN137 3.9 28.0 1.0 P F:PO4402 3.9 34.0 1.0 O2A F:ADP401 4.0 29.4 1.0 OD2 F:ASP11 4.2 30.8 1.0 O1B F:ADP401 4.3 29.4 1.0 CG F:GLN137 4.4 28.0 1.0 O1 F:PO4402 4.5 34.0 1.0 OD1 F:ASP11 4.5 30.8 1.0 O3A F:ADP401 4.5 29.4 1.0 O2 F:PO4402 4.6 34.0 1.0 OD1 F:ASP154 4.7 25.3 1.0 O4 F:PO4402 4.8 34.0 1.0 CG F:ASP11 4.8 30.8 1.0 CG2 F:VAL339 4.8 25.1 1.0 O F:ASN12 4.9 33.1 1.0 PA F:ADP401 4.9 29.4 1.0

Magnesium binding site 3 out of 3 in the Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Actomyosin-V Complex in the Rigor State (Central 3ER/2ER, Young Jasp-Stabilized F-Actin) within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg404 b:29.6 occ:1.00 O3B G:ADP402 2.5 28.4 1.0 O2B G:ADP402 3.0 28.4 1.0 PB G:ADP402 3.2 28.4 1.0 NE2 G:GLN137 3.3 31.1 1.0 O2A G:ADP402 3.5 28.4 1.0 O3 G:PO4403 3.6 37.8 1.0 CD G:GLN137 4.0 31.1 1.0 OD1 G:ASP154 4.3 28.3 1.0 OE1 G:GLN137 4.3 31.1 1.0 O3A G:ADP402 4.3 28.4 1.0 O1B G:ADP402 4.4 28.4 1.0 OD2 G:ASP11 4.5 32.0 1.0 PA G:ADP402 4.5 28.4 1.0 CG2 G:VAL339 4.7 26.2 1.0 CA G:GLY156 4.8 28.4 1.0 OD2 G:ASP154 4.8 28.3 1.0 CA G:GLY301 4.8 27.0 1.0 NZ G:LYS18 4.8 27.8 1.0 P G:PO4403 4.9 37.8 1.0 CG G:GLN137 4.9 31.1 1.0 CG G:ASP154 5.0 28.3 1.0

S.Pospich, H.L.Sweeney, A.Houdusse, S.Raunser. High-Resolution Structures of the Actomyosin-V Complex in Three Nucleotide States Provide Insights Into the Force Generation Mechanism. Elife V. 10 2021.
ISSN: ESSN 2050-084X
PubMed: 34812732
DOI: 10.7554/ELIFE.73724