Atomistry » Magnesium » PDB 7tr7-7u0y » 7txv
Atomistry »
  Magnesium »
    PDB 7tr7-7u0y »
      7txv »

Magnesium in PDB 7txv: Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)

Enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)

All present enzymatic activity of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg):
6.3.2.29; 6.3.2.30;

Other elements in 7txv:

The structure of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Magnesium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Magnesium atom in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) (pdb code 7txv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 16 binding sites of Magnesium where determined in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg), PDB code: 7txv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 1 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:47.7
occ:1.00
OE1 A:GLU450 2.9 27.6 1.0
O3B A:ATP906 3.5 63.3 1.0
CD A:GLU450 3.7 27.6 1.0
OE2 A:GLU450 3.7 27.6 1.0
OD1 A:ASN452 3.7 22.7 1.0
O3A A:ATP906 3.9 63.3 1.0
O1G A:ATP906 4.0 63.3 1.0
MG A:MG902 4.2 46.3 1.0
PB A:ATP906 4.2 63.3 1.0
PG A:ATP906 4.3 63.3 1.0
O2B A:ATP906 4.6 63.3 1.0
O3G A:ATP906 4.6 63.3 1.0
CG A:ASN452 4.8 22.7 1.0
CG A:GLU450 4.9 27.6 1.0

Magnesium binding site 2 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 2 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:46.3
occ:1.00
OD2 A:ASP431 2.3 23.3 1.0
O1G A:ATP906 2.4 63.3 1.0
CG A:ASP431 3.3 23.3 1.0
O3A A:ATP906 3.6 63.3 1.0
OE1 A:GLU450 3.6 27.6 1.0
OD1 A:ASP431 3.6 23.3 1.0
PG A:ATP906 3.8 63.3 1.0
OD1 A:ASN452 3.9 22.7 1.0
O5' A:ATP906 4.0 63.3 1.0
MG A:MG901 4.2 47.7 1.0
PA A:ATP906 4.2 63.3 1.0
O3B A:ATP906 4.3 63.3 1.0
O1A A:ATP906 4.4 63.3 1.0
O2G A:ATP906 4.5 63.3 1.0
PB A:ATP906 4.5 63.3 1.0
CB A:ASP431 4.5 23.3 1.0
NH2 A:ARG309 4.6 20.1 1.0
ND2 A:ASN452 4.7 22.7 1.0
CG A:ASN452 4.7 22.7 1.0
O3G A:ATP906 4.7 63.3 1.0
CD A:GLU450 4.8 27.6 1.0
NH2 A:ARG323 4.8 35.7 1.0
CB A:GLU450 4.9 27.6 1.0

Magnesium binding site 3 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 3 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg903

b:49.0
occ:1.00
O3G A:ATP907 2.5 32.4 1.0
NE2 A:HIS586 3.2 54.1 1.0
CD2 A:HIS586 3.7 54.1 1.0
PG A:ATP907 3.8 32.4 1.0
O A:THR496 4.0 19.4 1.0
O2G A:ATP907 4.1 32.4 1.0
CE1 A:HIS586 4.3 54.1 1.0
O3B A:ATP907 4.4 32.4 1.0
NZ A:LYS499 4.4 20.2 1.0
CG A:HIS586 4.9 54.1 1.0
O1B A:ATP907 4.9 32.4 1.0

Magnesium binding site 4 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 4 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg904

b:29.4
occ:1.00
OE2 A:GLU558 1.9 23.9 1.0
O1G A:ATP907 1.9 32.4 1.0
OG1 A:THR500 2.1 22.0 1.0
OG1 A:THR522 2.2 37.8 1.0
O2B A:ATP907 2.3 32.4 1.0
CD A:GLU558 2.8 23.9 1.0
OE1 A:GLU558 2.9 23.9 1.0
CG2 A:THR522 3.0 37.8 1.0
CB A:THR522 3.1 37.8 1.0
PG A:ATP907 3.4 32.4 1.0
CB A:THR500 3.5 22.0 1.0
PB A:ATP907 3.6 32.4 1.0
O1B A:ATP907 3.9 32.4 1.0
O3B A:ATP907 4.0 32.4 1.0
N A:THR522 4.0 37.8 1.0
CA A:THR522 4.2 37.8 1.0
N A:THR500 4.2 22.0 1.0
CA A:THR500 4.3 22.0 1.0
O3G A:ATP907 4.3 32.4 1.0
CG A:GLU558 4.3 23.9 1.0
O2G A:ATP907 4.4 32.4 1.0
O1A A:ATP907 4.4 32.4 1.0
CG2 A:THR500 4.4 22.0 1.0
CB A:LYS499 4.9 20.2 1.0
CE A:LYS499 4.9 20.2 1.0
O3A A:ATP907 4.9 32.4 1.0

Magnesium binding site 5 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 5 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg901

b:55.6
occ:1.00
OE1 B:GLU450 2.9 28.1 1.0
O3B B:ATP906 3.5 65.3 1.0
CD B:GLU450 3.7 28.1 1.0
OE2 B:GLU450 3.7 28.1 1.0
OD1 B:ASN452 3.7 22.9 1.0
O3A B:ATP906 3.9 65.3 1.0
O1G B:ATP906 4.0 65.3 1.0
MG B:MG902 4.2 49.1 1.0
PB B:ATP906 4.2 65.3 1.0
PG B:ATP906 4.3 65.3 1.0
O2B B:ATP906 4.6 65.3 1.0
O3G B:ATP906 4.6 65.3 1.0
CG B:ASN452 4.8 22.9 1.0
CG B:GLU450 4.9 28.1 1.0

Magnesium binding site 6 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 6 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:49.1
occ:1.00
OD2 B:ASP431 2.3 24.8 1.0
O1G B:ATP906 2.4 65.3 1.0
CG B:ASP431 3.3 24.8 1.0
O3A B:ATP906 3.6 65.3 1.0
OE1 B:GLU450 3.6 28.1 1.0
OD1 B:ASP431 3.6 24.8 1.0
PG B:ATP906 3.8 65.3 1.0
OD1 B:ASN452 3.9 22.9 1.0
O5' B:ATP906 4.0 65.3 1.0
MG B:MG901 4.2 55.6 1.0
PA B:ATP906 4.2 65.3 1.0
O3B B:ATP906 4.3 65.3 1.0
O1A B:ATP906 4.4 65.3 1.0
PB B:ATP906 4.5 65.3 1.0
O2G B:ATP906 4.5 65.3 1.0
CB B:ASP431 4.5 24.8 1.0
NH2 B:ARG309 4.6 21.0 1.0
ND2 B:ASN452 4.7 22.9 1.0
CG B:ASN452 4.7 22.9 1.0
O3G B:ATP906 4.7 65.3 1.0
CD B:GLU450 4.8 28.1 1.0
NH2 B:ARG323 4.8 37.5 1.0
CB B:GLU450 4.9 28.1 1.0

Magnesium binding site 7 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 7 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg903

b:58.1
occ:1.00
O3G B:ATP907 2.5 32.4 1.0
NE2 B:HIS586 3.2 57.6 1.0
CD2 B:HIS586 3.7 57.6 1.0
PG B:ATP907 3.8 32.4 1.0
O B:THR496 4.0 20.6 1.0
O2G B:ATP907 4.1 32.4 1.0
CE1 B:HIS586 4.3 57.6 1.0
O3B B:ATP907 4.4 32.4 1.0
NZ B:LYS499 4.4 20.1 1.0
CG B:HIS586 4.9 57.6 1.0
O1B B:ATP907 4.9 32.4 1.0

Magnesium binding site 8 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 8 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg904

b:29.8
occ:1.00
OE2 B:GLU558 1.9 24.3 1.0
O1G B:ATP907 1.9 32.4 1.0
OG1 B:THR500 2.1 21.2 1.0
OG1 B:THR522 2.2 37.5 1.0
O2B B:ATP907 2.3 32.4 1.0
CD B:GLU558 2.8 24.3 1.0
OE1 B:GLU558 2.9 24.3 1.0
CG2 B:THR522 3.0 37.5 1.0
CB B:THR522 3.1 37.5 1.0
PG B:ATP907 3.4 32.4 1.0
CB B:THR500 3.5 21.2 1.0
PB B:ATP907 3.6 32.4 1.0
O1B B:ATP907 3.9 32.4 1.0
O3B B:ATP907 4.0 32.4 1.0
N B:THR522 4.0 37.5 1.0
CA B:THR522 4.2 37.5 1.0
N B:THR500 4.2 21.2 1.0
CA B:THR500 4.3 21.2 1.0
O3G B:ATP907 4.3 32.4 1.0
CG B:GLU558 4.3 24.3 1.0
O2G B:ATP907 4.4 32.4 1.0
O1A B:ATP907 4.4 32.4 1.0
CG2 B:THR500 4.4 21.2 1.0
CB B:LYS499 4.9 20.1 1.0
CE B:LYS499 4.9 20.1 1.0
O3A B:ATP907 4.9 32.4 1.0

Magnesium binding site 9 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 9 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg901

b:55.3
occ:1.00
OE1 C:GLU450 2.9 28.7 1.0
O3B C:ATP906 3.5 64.8 1.0
CD C:GLU450 3.7 28.7 1.0
OE2 C:GLU450 3.7 28.7 1.0
OD1 C:ASN452 3.7 23.4 1.0
O3A C:ATP906 3.9 64.8 1.0
O1G C:ATP906 4.0 64.8 1.0
MG C:MG902 4.2 48.3 1.0
PB C:ATP906 4.2 64.8 1.0
PG C:ATP906 4.3 64.8 1.0
O2B C:ATP906 4.6 64.8 1.0
O3G C:ATP906 4.6 64.8 1.0
CG C:ASN452 4.8 23.4 1.0
CG C:GLU450 4.9 28.7 1.0

Magnesium binding site 10 out of 16 in 7txv

Go back to Magnesium Binding Sites List in 7txv
Magnesium binding site 10 out of 16 in the Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cyanophycin Synthetase 1 From Synechocystis Sp. UTEX2470 E82Q with Atp and 16X(Asp-Arg) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg902

b:48.3
occ:1.00
OD2 C:ASP431 2.3 24.9 1.0
O1G C:ATP906 2.4 64.8 1.0
CG C:ASP431 3.3 24.9 1.0
O3A C:ATP906 3.6 64.8 1.0
OE1 C:GLU450 3.6 28.7 1.0
OD1 C:ASP431 3.6 24.9 1.0
PG C:ATP906 3.8 64.8 1.0
OD1 C:ASN452 3.9 23.4 1.0
O5' C:ATP906 4.0 64.8 1.0
MG C:MG901 4.2 55.3 1.0
PA C:ATP906 4.2 64.8 1.0
O3B C:ATP906 4.3 64.8 1.0
O1A C:ATP906 4.4 64.8 1.0
O2G C:ATP906 4.5 64.8 1.0
PB C:ATP906 4.5 64.8 1.0
CB C:ASP431 4.5 24.9 1.0
NH2 C:ARG309 4.6 21.2 1.0
ND2 C:ASN452 4.7 23.4 1.0
CG C:ASN452 4.7 23.4 1.0
O3G C:ATP906 4.7 64.8 1.0
CD C:GLU450 4.8 28.7 1.0
NH2 C:ARG323 4.8 35.9 1.0
CB C:GLU450 4.9 28.7 1.0

Reference:

I.Sharon, S.Pinus, M.Grogg, N.Moitessier, D.Hilvert, T.M.Schmeing. A Cryptic Third Active Site in Cyanophycin Synthetase Creates Primers For Polymerization Nat Commun V. 13 3923 2022.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-022-31542-7
Page generated: Thu Oct 3 09:34:59 2024

Last articles

Cl in 7TRV
Cl in 7TSI
Cl in 7TSG
Cl in 7TSH
Cl in 7TRU
Cl in 7TPM
Cl in 7TRT
Cl in 7TRP
Cl in 7TQM
Cl in 7TP6
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy