Magnesium in PDB 7ux2: Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex

The binding sites of Magnesium atom in the Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex (pdb code 7ux2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex, PDB code: 7ux2:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:17.6 occ:1.00 O3G B:GTP401 2.0 17.2 1.0 CB B:THR21 2.5 19.8 1.0 O2A B:GTP401 2.8 17.2 1.0 H B:THR42 3.1 16.6 1.0 H B:THR21 3.1 19.8 1.0 O3A B:GTP401 3.3 17.2 1.0 PG B:GTP401 3.4 17.2 1.0 PA B:GTP401 3.5 17.2 1.0 O2B B:GTP401 3.6 17.2 1.0 CA B:THR21 3.7 19.8 1.0 O3B B:GTP401 3.7 17.2 1.0 CB B:THR42 3.7 16.6 1.0 N B:THR42 3.7 16.6 1.0 N B:THR21 3.7 19.8 1.0 PB B:GTP401 3.8 17.2 1.0 OD2 B:ASP62 3.9 26.9 1.0 O B:GLY40 3.9 19.3 1.0 HA B:ALA41 4.0 17.4 1.0 HA B:THR21 4.1 19.8 1.0 O1A B:GTP401 4.2 17.2 1.0 O1G B:GTP401 4.3 17.2 1.0 CA B:THR42 4.3 16.6 1.0 O2G B:GTP401 4.3 17.2 1.0 HB2 B:LYS20 4.5 26.9 1.0 OD1 B:ASP62 4.6 26.9 1.0 HA B:THR42 4.6 16.6 1.0 C B:ALA41 4.6 17.4 1.0 CG B:ASP62 4.7 26.9 1.0 HB3 B:LEU39 4.7 20.5 1.0 HD13 B:LEU39 4.7 20.5 1.0 CA B:ALA41 4.7 17.4 1.0 C B:THR21 4.8 19.8 1.0 H B:SER22 4.8 20.4 1.0 O5' B:GTP401 5.0 17.2 1.0 C B:LYS20 5.0 26.9 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Raptor-Tfeb-Rag-Ragulator Complex within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg402 b:16.4 occ:1.00 O3G I:GTP401 2.0 25.2 1.0 CB I:THR21 2.6 19.4 1.0 O3A I:GTP401 2.9 25.2 1.0 O2A I:GTP401 3.0 25.2 1.0 H I:THR21 3.0 19.4 1.0 PG I:GTP401 3.3 25.2 1.0 PA I:GTP401 3.5 25.2 1.0 O3B I:GTP401 3.6 25.2 1.0 PB I:GTP401 3.6 25.2 1.0 N I:THR21 3.6 19.4 1.0 CA I:THR21 3.6 19.4 1.0 CB I:THR42 3.7 25.9 1.0 O2B I:GTP401 3.8 25.2 1.0 H I:THR42 3.8 25.9 1.0 OD2 I:ASP62 3.8 22.7 1.0 O I:GLY40 3.9 29.4 1.0 HA I:THR21 4.0 19.4 1.0 N I:THR42 4.1 25.9 1.0 O1G I:GTP401 4.1 25.2 1.0 O1A I:GTP401 4.3 25.2 1.0 HB2 I:LYS20 4.3 21.0 1.0 HA I:ALA41 4.3 25.7 1.0 O2G I:GTP401 4.3 25.2 1.0 OD1 I:ASP62 4.4 22.7 1.0 CA I:THR42 4.5 25.9 1.0 CG I:ASP62 4.5 22.7 1.0 HA I:THR42 4.7 25.9 1.0 C I:ALA41 4.7 25.7 1.0 HE2 I:LYS20 4.7 21.0 1.0 HH21 I:ARG24 4.8 20.7 1.0 O5' I:GTP401 4.8 25.2 1.0 C I:LYS20 4.8 21.0 1.0 C I:THR21 4.9 19.4 1.0 H I:SER22 5.0 20.5 1.0

Z.Cui, J.Hurley. Structural Basis For MTORC1-Dependent Regulation of the Lysosomal and Autophagic Transcription Factor Tfeb To Be Published.