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Magnesium in PDB 7z03: Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna

Other elements in 7z03:

The structure of Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna also contains other interesting chemical elements:

Manganese (Mn) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna (pdb code 7z03). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna, PDB code: 7z03:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7z03

Go back to Magnesium Binding Sites List in 7z03
Magnesium binding site 1 out of 2 in the Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1102

b:45.6
occ:1.00
O3B C:ADP1101 1.8 58.1 1.0
OE1 C:GLN155 2.0 51.7 1.0
OG1 C:THR44 2.4 37.1 1.0
CD C:GLN155 3.0 51.7 1.0
PB C:ADP1101 3.1 58.1 1.0
NE2 C:GLN155 3.5 51.7 1.0
O1B C:ADP1101 3.5 58.1 1.0
OE1 C:GLU984 3.6 53.6 1.0
CB C:THR44 3.7 37.1 1.0
OD2 C:ASP983 3.8 47.4 1.0
O2B C:ADP1101 4.0 58.1 1.0
N D:GLY953 4.1 45.6 1.0
OE2 C:GLU984 4.2 53.6 1.0
CD C:GLU984 4.2 53.6 1.0
CG C:GLN155 4.2 51.7 1.0
OG D:SER952 4.2 46.9 1.0
CG2 C:THR44 4.2 37.1 1.0
O3A C:ADP1101 4.2 58.1 1.0
OD1 C:ASP983 4.2 47.4 1.0
O2A C:ADP1101 4.3 58.1 1.0
CB C:GLN155 4.4 51.7 1.0
CG C:ASP983 4.4 47.4 1.0
CA D:GLY953 4.6 45.6 1.0
PA C:ADP1101 4.7 58.1 1.0
CA C:THR44 4.8 37.1 1.0
N C:THR44 4.9 37.1 1.0

Magnesium binding site 2 out of 2 in 7z03

Go back to Magnesium Binding Sites List in 7z03
Magnesium binding site 2 out of 2 in the Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Endonuclease State of the E. Coli MRE11-RAD50 (Sbccd) Head Complex Bound to Adp and Extended Dsdna within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1102

b:41.4
occ:1.00
OG1 D:THR44 2.1 37.2 1.0
O1B D:ADP1101 2.1 47.9 1.0
OE1 D:GLN155 2.2 61.6 1.0
NE2 D:GLN155 2.3 61.6 1.0
CD D:GLN155 2.6 61.6 1.0
CB D:THR44 3.3 37.2 1.0
PB D:ADP1101 3.3 47.9 1.0
OD1 D:ASP983 3.5 54.2 1.0
O2B D:ADP1101 3.5 47.9 1.0
CG2 D:THR44 3.7 37.2 1.0
CG D:GLN155 4.0 61.6 1.0
N C:GLY953 4.2 40.4 1.0
O1A D:ADP1101 4.3 47.9 1.0
O3B D:ADP1101 4.3 47.9 1.0
O3A D:ADP1101 4.4 47.9 1.0
CG D:ASP983 4.5 54.2 1.0
CA D:THR44 4.5 37.2 1.0
CA C:GLY953 4.6 40.4 1.0
N D:THR44 4.7 37.2 1.0
OD2 D:ASP983 4.7 54.2 1.0
OG C:SER952 4.7 39.3 1.0
CB D:GLN155 4.7 61.6 1.0
PA D:ADP1101 4.8 47.9 1.0

Reference:

F.Gut, L.Kashammer, K.Lammens, J.D.Bartho, A.M.Boggusch, E.Van De Logt, B.Kessler, K.P.Hopfner. Structural Mechanism of Endonucleolytic Processing of Blocked Dna Ends and Hairpins By MRE11-RAD50. Mol.Cell V. 82 3513 2022.
ISSN: ISSN 1097-2765
PubMed: 35987200
DOI: 10.1016/J.MOLCEL.2022.07.019
Page generated: Thu Oct 3 16:11:58 2024

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