Magnesium in PDB 7z7h: Structure of P. Luminescens TCCC3-F-Actin Complex

The binding sites of Magnesium atom in the Structure of P. Luminescens TCCC3-F-Actin Complex (pdb code 7z7h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Structure of P. Luminescens TCCC3-F-Actin Complex, PDB code: 7z7h:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:137.4 occ:1.00 O1B D:ADP401 1.8 133.5 1.0 O1A D:ADP401 1.9 133.5 1.0 O3A D:ADP401 2.0 133.5 1.0 PA D:ADP401 2.3 133.5 1.0 PB D:ADP401 2.4 133.5 1.0 O2A D:ADP401 3.1 133.5 1.0 O3B D:ADP401 3.2 133.5 1.0 O2B D:ADP401 3.6 133.5 1.0 O5' D:ADP401 3.7 133.5 1.0 CA D:GLY156 4.1 122.6 1.0 NZ D:LYS18 4.3 114.0 1.0 N D:ASP157 4.3 133.2 1.0 C5' D:ADP401 4.6 133.5 1.0 C D:GLY156 4.8 122.6 1.0 CA D:GLY301 5.0 121.8 1.0 N D:GLY302 5.0 124.5 1.0

Magnesium binding site 2 out of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:127.9 occ:1.00 O1B B:ADP401 1.8 131.0 1.0 O3A B:ADP401 1.9 131.0 1.0 O1A B:ADP401 2.0 131.0 1.0 PB B:ADP401 2.3 131.0 1.0 PA B:ADP401 2.3 131.0 1.0 O3B B:ADP401 3.0 131.0 1.0 O2A B:ADP401 3.2 131.0 1.0 O2B B:ADP401 3.6 131.0 1.0 O5' B:ADP401 3.6 131.0 1.0 NZ B:LYS18 3.7 123.0 1.0 CA B:GLY156 4.4 123.7 1.0 C5' B:ADP401 4.5 131.0 1.0 N B:ASP157 4.8 133.1 1.0 CE B:LYS18 5.0 123.0 1.0

Magnesium binding site 3 out of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:118.2 occ:1.00 O3B E:ADP401 2.0 154.9 1.0 O1B E:ADP401 2.0 154.9 1.0 PB E:ADP401 2.2 154.9 1.0 O3A E:ADP401 2.7 154.9 1.0 O2B E:ADP401 3.7 154.9 1.0 O1A E:ADP401 3.8 154.9 1.0 PA E:ADP401 3.9 154.9 1.0 CA E:GLY156 4.3 153.5 1.0 NZ E:LYS18 4.4 164.0 1.0 O2A E:ADP401 4.6 154.9 1.0 OD2 E:ASP154 4.8 145.0 1.0 N E:ASP157 4.9 162.4 1.0 O5' E:ADP401 4.9 154.9 1.0

Magnesium binding site 4 out of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:116.2 occ:1.00 O1B C:ADP401 2.0 126.5 1.0 O3B C:ADP401 2.0 126.5 1.0 PB C:ADP401 2.2 126.5 1.0 O3A C:ADP401 2.7 126.5 1.0 O2B C:ADP401 3.7 126.5 1.0 O1A C:ADP401 3.8 126.5 1.0 PA C:ADP401 3.8 126.5 1.0 CA C:GLY156 4.1 122.7 1.0 NZ C:LYS18 4.5 132.5 1.0 O2A C:ADP401 4.5 126.5 1.0 N C:ASP157 4.7 126.8 1.0 CA C:GLY13 4.8 120.6 1.0 C C:GLY156 5.0 122.7 1.0 O5' C:ADP401 5.0 126.5 1.0

Magnesium binding site 5 out of 5 in the Structure of P. Luminescens TCCC3-F-Actin Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of P. Luminescens TCCC3-F-Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:164.1 occ:1.00 O1B A:ADP401 2.0 166.4 1.0 O3B A:ADP401 2.1 166.4 1.0 PB A:ADP401 2.2 166.4 1.0 O3A A:ADP401 2.7 166.4 1.0 O2B A:ADP401 3.7 166.4 1.0 O1A A:ADP401 3.8 166.4 1.0 CA A:GLY156 3.8 175.9 1.0 PA A:ADP401 3.8 166.4 1.0 OD2 A:ASP154 4.3 177.5 1.0 N A:GLY156 4.4 175.9 1.0 O2A A:ADP401 4.6 166.4 1.0 OD1 A:ASP154 4.7 177.5 1.0 N A:ASP157 4.7 175.2 1.0 C A:GLY156 4.7 175.9 1.0 O5' A:ADP401 4.9 166.4 1.0 CG A:ASP154 4.9 177.5 1.0 NZ A:LYS18 5.0 149.1 1.0 CA A:GLY13 5.0 161.4 1.0

A.Belyy, F.Lindemann, D.Roderer, J.Funk, B.Bardiaux, J.Protze, P.Bieling, H.Oschkinat, S.Raunser. Mechanism of Threonine Adp-Ribosylation of F-Actin By A Tc Toxin. Nat Commun V. 13 4202 2022.
ISSN: ESSN 2041-1723
PubMed: 35858890
DOI: 10.1038/S41467-022-31836-W