Magnesium in PDB 7z8i: The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)

The binding sites of Magnesium atom in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) (pdb code 7z8i). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2), PDB code: 7z8i:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:15.4 occ:1.00 O3B A:ADP800 2.0 11.8 1.0 OE1 A:GLN142 2.1 17.9 1.0 CD A:GLN142 3.3 17.2 1.0 PB A:ADP800 3.4 10.3 1.0 NE2 A:GLN142 4.0 17.1 1.0 O1B A:ADP800 4.1 10.4 1.0 OD1 A:ASP159 4.1 14.2 1.0 OD2 A:ASP159 4.2 15.2 1.0 OD2 A:ASP15 4.2 15.6 1.0 O2A A:ADP800 4.2 11.5 1.0 O3A A:ADP800 4.3 9.5 1.0 OD1 A:ASP15 4.4 16.3 1.0 O2B A:ADP800 4.4 10.5 1.0 CG A:GLN142 4.4 17.1 1.0 CB A:GLN142 4.5 16.7 1.0 CG A:ASP159 4.5 14.1 1.0 OG1 A:THR340 4.5 16.1 1.0 CG A:ASP15 4.7 15.7 1.0 PA A:ADP800 4.8 9.1 1.0 CA A:GLY17 4.9 11.0 1.0 CA A:GLY161 5.0 9.1 1.0

Magnesium binding site 2 out of 6 in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:17.2 occ:1.00 O2B B:ADP800 2.0 15.3 1.0 PB B:ADP800 3.3 12.9 1.0 OD2 B:ASP15 3.5 15.6 1.0 O1B B:ADP800 3.6 17.1 1.0 OD1 B:ASP15 3.8 18.2 1.0 CG2 B:THR340 3.9 16.5 1.0 CD B:GLN142 4.0 17.7 1.0 NE2 B:GLN142 4.1 17.1 1.0 CG B:ASP15 4.1 16.2 1.0 OE1 B:GLN142 4.1 17.5 1.0 O3B B:ADP800 4.3 12.1 1.0 O3A B:ADP800 4.3 16.5 1.0 OD1 B:ASP159 4.4 15.2 1.0 CG B:GLN142 4.4 18.4 1.0 O2A B:ADP800 4.4 16.2 1.0 NZ B:LYS22 4.7 15.2 1.0 CA B:GLY17 4.7 16.3 1.0 OD2 B:ASP159 4.8 16.0 1.0 CE B:LYS22 4.8 16.9 1.0 CB B:GLN142 4.9 18.4 1.0 PA B:ADP800 4.9 18.4 1.0 CB B:THR340 5.0 16.6 1.0 CG B:ASP159 5.0 15.4 1.0

Magnesium binding site 3 out of 6 in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg801 b:23.0 occ:1.00 O2B C:ADP800 2.1 17.6 1.0 PB C:ADP800 3.4 13.9 1.0 O3B C:ADP800 3.7 17.8 1.0 NE2 C:GLN142 3.9 20.6 1.0 OD2 C:ASP15 3.9 21.1 1.0 OD1 C:ASP15 3.9 21.1 1.0 O3A C:ADP800 4.1 19.1 1.0 CD C:GLN142 4.1 20.0 1.0 CG C:ASP15 4.3 20.6 1.0 OE1 C:GLN142 4.3 20.1 1.0 O2A C:ADP800 4.5 19.9 1.0 OD1 C:ASP159 4.5 22.5 1.0 O1B C:ADP800 4.6 15.5 1.0 OG1 C:THR340 4.6 18.9 1.0 CA C:GLY17 4.6 18.7 1.0 NZ C:LYS22 4.7 18.9 1.0 PA C:ADP800 4.7 20.0 1.0 CE C:LYS22 4.8 20.0 1.0 CG C:GLN142 4.8 19.1 1.0 OD2 C:ASP159 4.9 21.2 1.0 CB C:THR340 5.0 17.9 1.0

Magnesium binding site 4 out of 6 in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg801 b:16.3 occ:1.00 O2B D:ADP800 2.1 14.2 1.0 PB D:ADP800 2.9 13.9 1.0 O3B D:ADP800 2.9 13.7 1.0 O3A D:ADP800 3.4 11.9 1.0 OD2 D:ASP159 4.0 11.6 1.0 NE2 D:GLN142 4.0 15.8 1.0 OD1 D:ASP159 4.1 11.0 1.0 O2A D:ADP800 4.1 11.1 1.0 OE1 D:GLN142 4.2 14.9 1.0 O1B D:ADP800 4.3 12.2 1.0 PA D:ADP800 4.3 10.9 1.0 CD D:GLN142 4.4 15.5 1.0 CG D:ASP159 4.5 11.2 1.0 OD2 D:ASP15 4.6 16.2 1.0 CA D:GLY161 4.6 9.6 1.0 OD1 D:ASP15 4.6 16.4 1.0 OG1 D:THR340 4.7 13.5 1.0 NZ D:LYS22 4.7 15.5 1.0 CA D:GLY17 4.8 14.4 1.0 O1A D:ADP800 5.0 14.4 1.0

Magnesium binding site 5 out of 6 in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg801 b:29.0 occ:1.00 O2B E:ADP800 2.1 21.9 1.0 PB E:ADP800 3.2 20.7 1.0 O3B E:ADP800 3.5 20.5 1.0 O3A E:ADP800 3.6 18.4 1.0 NE2 E:GLN142 3.7 24.0 1.0 OD2 E:ASP159 4.0 19.5 1.0 O2A E:ADP800 4.1 20.4 1.0 CD E:GLN142 4.1 23.8 1.0 OD2 E:ASP15 4.1 25.0 1.0 OD1 E:ASP15 4.1 29.0 1.0 OE1 E:GLN142 4.2 22.8 1.0 OG1 E:THR340 4.3 21.9 1.0 PA E:ADP800 4.3 14.6 1.0 O1B E:ADP800 4.5 23.4 1.0 CG E:ASP15 4.6 26.6 1.0 CA E:GLY17 4.7 26.7 1.0 O1A E:ADP800 4.7 17.5 1.0 OD1 E:ASP159 4.7 20.6 1.0 CB E:THR340 4.8 24.4 1.0 CG E:ASP159 4.8 19.0 1.0 CG2 E:THR340 4.9 24.8 1.0 CA E:GLY161 4.9 18.0 1.0 CG E:GLN142 5.0 23.9 1.0

Magnesium binding site 6 out of 6 in the The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Barbed End Complex of Dynactin Bound to BICDR1 and the Cytoplasmic Dynein Tails (A2, B1, B2) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg801 b:14.3 occ:1.00 O1B F:ADP800 2.0 30.2 1.0 PB F:ADP800 2.9 30.7 1.0 O3B F:ADP800 2.9 28.1 1.0 O3A F:ADP800 3.7 20.5 1.0 NE2 F:GLN142 4.0 21.6 1.0 OD2 F:ASP15 4.0 25.2 1.0 OD2 F:ASP159 4.1 15.7 1.0 CD F:GLN142 4.2 18.3 1.0 O2B F:ADP800 4.3 25.1 1.0 OD1 F:ASP159 4.3 15.6 1.0 OG1 F:THR340 4.4 18.4 1.0 OD1 F:ASP15 4.4 22.4 1.0 O2A F:ADP800 4.5 21.6 1.0 PA F:ADP800 4.5 20.9 1.0 CG F:GLN142 4.5 17.8 1.0 CG2 F:THR340 4.6 17.0 1.0 OE1 F:GLN142 4.6 16.4 1.0 CG F:ASP15 4.7 24.8 1.0 CG F:ASP159 4.7 15.9 1.0 O1A F:ADP800 4.9 24.8 1.0 CA F:GLY17 4.9 26.6 1.0 NZ F:LYS22 4.9 23.5 1.0 CB F:THR340 5.0 17.4 1.0

S.Chaaban, A.P.Carter. Structure of Dynein-Dynactin on Microtubules Shows Tandem Adaptor Binding. Nature V. 610 212 2022.
ISSN: ESSN 1476-4687
PubMed: 36071160
DOI: 10.1038/S41586-022-05186-Y