Atomistry » Magnesium » PDB 8a65-8ac2 » 8aa3
Atomistry »
  Magnesium »
    PDB 8a65-8ac2 »
      8aa3 »

Magnesium in PDB 8aa3: Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 (pdb code 8aa3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25, PDB code: 8aa3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8aa3

Go back to Magnesium Binding Sites List in 8aa3
Magnesium binding site 1 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:10.5
occ:1.00
 OD1 B:ASN401 2.1 47.0 1.0
O B:TYR273 2.1 47.5 1.0
ND2 A:ASN664 2.2 58.9 1.0
OE1 B:GLU262 2.4 55.7 1.0
O B:SER399 2.6 40.4 1.0
OE2 B:GLU262 3.0 64.0 1.0
CD B:GLU262 3.0 58.1 1.0
CG B:ASN401 3.1 41.5 1.0
C B:TYR273 3.2 42.5 1.0
CG A:ASN664 3.4 64.6 1.0
N B:TYR273 3.4 30.2 1.0
ND2 B:ASN401 3.7 41.2 1.0
CA B:TYR273 3.8 31.4 1.0
C B:SER399 3.8 34.3 1.0
OD1 A:ASN664 4.0 72.6 1.0
N B:ASN401 4.1 32.8 1.0
CB B:TYR273 4.2 33.3 1.0
CB B:ASN401 4.3 29.9 1.0
C B:GLN272 4.4 34.9 1.0
N B:SER274 4.4 37.4 1.0
CA B:ASN401 4.4 26.3 1.0
CB A:ASN664 4.4 52.4 1.0
CG B:GLU262 4.5 52.9 1.0
C B:LEU400 4.5 39.8 1.0
CB B:SER399 4.5 37.2 1.0
CA A:ASN664 4.5 53.5 1.0
CA B:GLN272 4.6 32.5 1.0
CA B:SER399 4.7 29.7 1.0
CA B:LEU400 4.7 34.8 1.0
N B:LEU400 4.7 40.0 1.0
OG B:SER399 4.7 44.7 1.0
CA B:SER274 4.8 34.0 1.0

Magnesium binding site 2 out of 4 in 8aa3

Go back to Magnesium Binding Sites List in 8aa3
Magnesium binding site 2 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1101

b:55.0
occ:1.00
 OD1 A:ASN841 2.1 70.7 1.0
OD2 A:ASP848 2.1 70.1 1.0
OD1 A:ASP839 2.2 78.5 1.0
OD1 A:ASP848 2.3 72.6 1.0
CG A:ASP848 2.5 69.2 1.0
O A:VAL843 2.7 62.7 1.0
OD1 A:ASP837 2.7 69.7 1.0
CG A:ASN841 2.8 71.0 1.0
ND2 A:ASN841 2.9 70.6 1.0
CG A:ASP839 3.2 75.9 1.0
CG A:ASP837 3.4 71.1 1.0
OD2 A:ASP839 3.4 73.3 1.0
OD2 A:ASP837 3.6 75.8 1.0
OD1 A:ASP845 3.6 77.2 1.0
C A:VAL843 3.9 60.4 1.0
CB A:ASP848 4.0 66.0 1.0
CB A:ASN841 4.2 68.0 1.0
N A:ASN841 4.3 69.1 1.0
N A:ASP839 4.5 73.8 1.0
CG A:ASP845 4.5 75.5 1.0
CA A:ILE844 4.5 59.1 1.0
CB A:ASP839 4.5 74.4 1.0
CB A:ASP837 4.6 66.8 1.0
N A:VAL843 4.6 61.8 1.0
N A:ILE844 4.6 57.5 1.0
CA A:ASP837 4.7 63.5 1.0
N A:HIS840 4.7 75.5 1.0
N A:ASP845 4.7 64.6 1.0
CA A:ASN841 4.7 69.2 1.0
CA A:ASP848 4.8 64.9 1.0
N A:ILE838 4.8 68.8 1.0
OD2 A:ASP845 4.8 74.3 1.0
CD1 A:ILE844 4.8 61.4 1.0
N A:ASP848 4.9 65.8 1.0
CA A:ASP839 4.9 72.7 1.0
CA A:VAL843 4.9 62.7 1.0
C A:ASP837 5.0 68.2 1.0
C A:ASP839 5.0 73.5 1.0

Magnesium binding site 3 out of 4 in 8aa3

Go back to Magnesium Binding Sites List in 8aa3
Magnesium binding site 3 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg601

b:10.5
occ:1.00
 OD1 J:ASN401 2.1 47.0 1.0
O J:TYR273 2.1 47.5 1.0
ND2 I:ASN664 2.2 58.9 1.0
OE1 J:GLU262 2.4 55.7 1.0
O J:SER399 2.6 40.4 1.0
OE2 J:GLU262 3.0 64.0 1.0
CD J:GLU262 3.0 58.1 1.0
CG J:ASN401 3.1 41.5 1.0
C J:TYR273 3.2 42.5 1.0
CG I:ASN664 3.4 64.6 1.0
N J:TYR273 3.4 30.2 1.0
ND2 J:ASN401 3.7 41.2 1.0
CA J:TYR273 3.8 31.4 1.0
C J:SER399 3.8 34.3 1.0
OD1 I:ASN664 4.0 72.6 1.0
N J:ASN401 4.1 32.8 1.0
CB J:TYR273 4.2 33.3 1.0
CB J:ASN401 4.3 29.9 1.0
C J:GLN272 4.4 34.9 1.0
N J:SER274 4.4 37.4 1.0
CB I:ASN664 4.4 52.4 1.0
CA J:ASN401 4.4 26.3 1.0
CG J:GLU262 4.5 52.9 1.0
C J:LEU400 4.5 39.8 1.0
CB J:SER399 4.5 37.2 1.0
CA I:ASN664 4.5 53.5 1.0
CA J:GLN272 4.6 32.5 1.0
CA J:SER399 4.7 29.7 1.0
CA J:LEU400 4.7 34.8 1.0
N J:LEU400 4.7 40.0 1.0
OG J:SER399 4.7 44.7 1.0
CA J:SER274 4.8 34.0 1.0
N I:ASN664 5.0 57.0 1.0

Magnesium binding site 4 out of 4 in 8aa3

Go back to Magnesium Binding Sites List in 8aa3
Magnesium binding site 4 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg1101

b:55.0
occ:1.00
 OD1 I:ASN841 2.1 70.7 1.0
OD2 I:ASP848 2.1 70.1 1.0
OD1 I:ASP839 2.2 78.5 1.0
OD1 I:ASP848 2.3 72.6 1.0
CG I:ASP848 2.5 69.2 1.0
O I:VAL843 2.7 62.7 1.0
OD1 I:ASP837 2.7 69.7 1.0
CG I:ASN841 2.8 71.0 1.0
ND2 I:ASN841 2.9 70.6 1.0
CG I:ASP839 3.2 75.9 1.0
CG I:ASP837 3.4 71.1 1.0
OD2 I:ASP839 3.4 73.3 1.0
OD2 I:ASP837 3.6 75.8 1.0
OD1 I:ASP845 3.6 77.2 1.0
C I:VAL843 3.9 60.4 1.0
CB I:ASP848 4.0 66.0 1.0
CB I:ASN841 4.2 68.0 1.0
N I:ASN841 4.3 69.1 1.0
N I:ASP839 4.5 73.8 1.0
CG I:ASP845 4.5 75.5 1.0
CA I:ILE844 4.5 59.1 1.0
CB I:ASP839 4.5 74.4 1.0
CB I:ASP837 4.6 66.8 1.0
N I:VAL843 4.6 61.8 1.0
N I:ILE844 4.6 57.5 1.0
CA I:ASP837 4.7 63.5 1.0
N I:HIS840 4.7 75.5 1.0
N I:ASP845 4.7 64.6 1.0
CA I:ASN841 4.7 69.2 1.0
CA I:ASP848 4.8 64.9 1.0
N I:ILE838 4.8 68.8 1.0
OD2 I:ASP845 4.8 74.3 1.0
CD1 I:ILE844 4.8 61.4 1.0
N I:ASP848 4.9 65.8 1.0
CA I:ASP839 4.9 72.7 1.0
CA I:VAL843 4.9 62.7 1.0
C I:ASP837 5.0 68.2 1.0
C I:ASP839 5.0 73.5 1.0

Reference:

J.B.R.White, A.Silale, M.Feasy, T.Heunis, Y.Zhu, H.Zheng, A.Gajbhiye, S.Firbank, A.Basle, M.Trost, D.N.Bolam, B.Van Den Berg, N.A.Ranson. Outer Membrane Utilisomes Mediate Glycan Uptake in Gut Bacteroidetes Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06146-W
Page generated: Thu Oct 3 18:01:53 2024

Last articles

Mg in 6RKC
Mg in 6RL4
Mg in 6RL6
Mg in 6RKE
Mg in 6RL3
Mg in 6RKM
Mg in 6RKK
Mg in 6RKI
Mg in 6RKD
Mg in 6RIQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy