Magnesium in PDB 8bmd: Structure of Groel-Atp Complex Under Continuous Turnover Conditions
Enzymatic activity of Structure of Groel-Atp Complex Under Continuous Turnover Conditions
All present enzymatic activity of Structure of Groel-Atp Complex Under Continuous Turnover Conditions:
5.6.1.7;
Other elements in 8bmd:
The structure of Structure of Groel-Atp Complex Under Continuous Turnover Conditions also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
(pdb code 8bmd). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
Structure of Groel-Atp Complex Under Continuous Turnover Conditions, PDB code: 8bmd:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 1 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg601
b:30.4
occ:0.00
|
O2A
|
G:ATP602
|
2.0
|
33.3
|
1.0
|
|
O3G
|
G:ATP602
|
2.3
|
34.6
|
1.0
|
|
OD1
|
G:ASP87
|
2.3
|
35.7
|
1.0
|
|
O1B
|
G:ATP602
|
2.8
|
36.9
|
1.0
|
|
CG
|
G:ASP87
|
3.1
|
32.8
|
1.0
|
|
OD2
|
G:ASP87
|
3.1
|
35.6
|
1.0
|
|
PA
|
G:ATP602
|
3.3
|
25.4
|
1.0
|
|
PB
|
G:ATP602
|
3.4
|
23.4
|
1.0
|
|
O3B
|
G:ATP602
|
3.4
|
25.8
|
1.0
|
|
PG
|
G:ATP602
|
3.5
|
33.4
|
1.0
|
|
O3A
|
G:ATP602
|
3.5
|
21.9
|
1.0
|
|
OG
|
G:SER151
|
4.0
|
42.3
|
1.0
|
|
O
|
G:SER151
|
4.0
|
41.2
|
1.0
|
|
O2G
|
G:ATP602
|
4.2
|
35.9
|
1.0
|
|
C5'
|
G:ATP602
|
4.3
|
25.1
|
1.0
|
|
O1A
|
G:ATP602
|
4.3
|
26.0
|
1.0
|
|
O
|
G:HOH753
|
4.3
|
40.2
|
1.0
|
|
O5'
|
G:ATP602
|
4.3
|
21.2
|
1.0
|
|
O
|
G:HOH706
|
4.4
|
19.2
|
1.0
|
|
CB
|
G:ASP87
|
4.5
|
29.5
|
1.0
|
|
N
|
G:GLY88
|
4.5
|
27.8
|
1.0
|
|
CA
|
G:SER151
|
4.5
|
22.7
|
1.0
|
|
OD2
|
G:ASP398
|
4.6
|
47.0
|
1.0
|
|
O1G
|
G:ATP602
|
4.6
|
18.8
|
1.0
|
|
CB
|
G:ASP398
|
4.6
|
34.4
|
1.0
|
|
C
|
G:SER151
|
4.7
|
31.7
|
1.0
|
|
CG
|
G:ASP398
|
4.8
|
42.2
|
1.0
|
|
CB
|
G:SER151
|
4.8
|
23.9
|
1.0
|
|
O2B
|
G:ATP602
|
4.9
|
26.8
|
1.0
|
|
CA
|
G:ASP87
|
4.9
|
22.7
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 2 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:40.7
occ:0.00
|
O2A
|
A:ATP602
|
2.2
|
42.8
|
1.0
|
|
O3G
|
A:ATP602
|
2.3
|
44.5
|
1.0
|
|
OD1
|
A:ASP87
|
2.4
|
45.0
|
1.0
|
|
O1B
|
A:ATP602
|
2.7
|
46.0
|
1.0
|
|
CG
|
A:ASP87
|
3.1
|
42.3
|
1.0
|
|
OD2
|
A:ASP87
|
3.2
|
42.7
|
1.0
|
|
PB
|
A:ATP602
|
3.3
|
36.8
|
1.0
|
|
O3B
|
A:ATP602
|
3.4
|
35.2
|
1.0
|
|
PG
|
A:ATP602
|
3.5
|
47.2
|
1.0
|
|
PA
|
A:ATP602
|
3.5
|
32.4
|
1.0
|
|
O3A
|
A:ATP602
|
3.6
|
33.8
|
1.0
|
|
O
|
A:SER151
|
4.0
|
49.2
|
1.0
|
|
OG
|
A:SER151
|
4.0
|
51.2
|
1.0
|
|
O2G
|
A:ATP602
|
4.2
|
45.9
|
1.0
|
|
O
|
A:HOH737
|
4.3
|
46.2
|
1.0
|
|
C5'
|
A:ATP602
|
4.3
|
32.9
|
1.0
|
|
O
|
A:HOH710
|
4.4
|
27.7
|
1.0
|
|
O5'
|
A:ATP602
|
4.4
|
35.6
|
1.0
|
|
CA
|
A:SER151
|
4.5
|
34.2
|
1.0
|
|
O1A
|
A:ATP602
|
4.5
|
35.2
|
1.0
|
|
N
|
A:GLY88
|
4.5
|
33.5
|
1.0
|
|
CB
|
A:ASP87
|
4.6
|
35.8
|
1.0
|
|
OD2
|
A:ASP398
|
4.6
|
57.9
|
1.0
|
|
O1G
|
A:ATP602
|
4.6
|
29.1
|
1.0
|
|
C
|
A:SER151
|
4.7
|
39.7
|
1.0
|
|
CB
|
A:ASP398
|
4.7
|
48.3
|
1.0
|
|
CG
|
A:ASP398
|
4.8
|
54.5
|
1.0
|
|
CB
|
A:SER151
|
4.8
|
36.1
|
1.0
|
|
O2B
|
A:ATP602
|
4.8
|
39.9
|
1.0
|
|
CA
|
A:ASP87
|
5.0
|
32.1
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 3 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:41.1
occ:0.00
|
O2A
|
B:ATP602
|
2.3
|
44.6
|
1.0
|
|
O3G
|
B:ATP602
|
2.3
|
44.1
|
1.0
|
|
OD1
|
B:ASP87
|
2.4
|
46.9
|
1.0
|
|
O1B
|
B:ATP602
|
2.4
|
51.0
|
1.0
|
|
CG
|
B:ASP87
|
3.1
|
46.5
|
1.0
|
|
OD2
|
B:ASP87
|
3.1
|
45.6
|
1.0
|
|
PB
|
B:ATP602
|
3.3
|
33.2
|
1.0
|
|
O3B
|
B:ATP602
|
3.5
|
32.2
|
1.0
|
|
PA
|
B:ATP602
|
3.5
|
34.0
|
1.0
|
|
PG
|
B:ATP602
|
3.5
|
48.0
|
1.0
|
|
O3A
|
B:ATP602
|
3.6
|
32.8
|
1.0
|
|
O
|
B:SER151
|
4.0
|
54.0
|
1.0
|
|
OG
|
B:SER151
|
4.0
|
55.0
|
1.0
|
|
C5'
|
B:ATP602
|
4.2
|
34.3
|
1.0
|
|
O2G
|
B:ATP602
|
4.3
|
46.0
|
1.0
|
|
O5'
|
B:ATP602
|
4.4
|
38.8
|
1.0
|
|
CA
|
B:SER151
|
4.4
|
35.7
|
1.0
|
|
O
|
B:HOH731
|
4.5
|
30.9
|
1.0
|
|
CB
|
B:ASP87
|
4.5
|
41.3
|
1.0
|
|
N
|
B:GLY88
|
4.5
|
33.3
|
1.0
|
|
O1A
|
B:ATP602
|
4.6
|
35.2
|
1.0
|
|
C
|
B:SER151
|
4.7
|
44.3
|
1.0
|
|
O1G
|
B:ATP602
|
4.7
|
34.1
|
1.0
|
|
OD2
|
B:ASP398
|
4.7
|
58.1
|
1.0
|
|
O2B
|
B:ATP602
|
4.7
|
33.4
|
1.0
|
|
CB
|
B:ASP398
|
4.8
|
47.4
|
1.0
|
|
CB
|
B:SER151
|
4.8
|
36.4
|
1.0
|
|
CG
|
B:ASP398
|
4.9
|
57.0
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 4 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:39.4
occ:0.00
|
O2A
|
C:ATP602
|
2.3
|
41.0
|
1.0
|
|
OD1
|
C:ASP87
|
2.4
|
47.2
|
1.0
|
|
O1B
|
C:ATP602
|
2.4
|
46.9
|
1.0
|
|
O3G
|
C:ATP602
|
2.5
|
38.4
|
1.0
|
|
CG
|
C:ASP87
|
3.1
|
44.5
|
1.0
|
|
OD2
|
C:ASP87
|
3.1
|
43.3
|
1.0
|
|
PB
|
C:ATP602
|
3.2
|
29.5
|
1.0
|
|
O3B
|
C:ATP602
|
3.4
|
32.9
|
1.0
|
|
O3A
|
C:ATP602
|
3.5
|
32.1
|
1.0
|
|
PA
|
C:ATP602
|
3.5
|
31.6
|
1.0
|
|
PG
|
C:ATP602
|
3.6
|
44.8
|
1.0
|
|
OG
|
C:SER151
|
4.0
|
50.7
|
1.0
|
|
O
|
C:HOH733
|
4.0
|
42.6
|
1.0
|
|
O
|
C:SER151
|
4.1
|
54.1
|
1.0
|
|
C5'
|
C:ATP602
|
4.2
|
29.4
|
1.0
|
|
O
|
C:HOH712
|
4.2
|
34.1
|
1.0
|
|
O5'
|
C:ATP602
|
4.4
|
33.9
|
1.0
|
|
O2G
|
C:ATP602
|
4.4
|
48.1
|
1.0
|
|
CA
|
C:SER151
|
4.5
|
36.0
|
1.0
|
|
N
|
C:GLY88
|
4.5
|
33.9
|
1.0
|
|
CB
|
C:ASP87
|
4.5
|
38.5
|
1.0
|
|
O1A
|
C:ATP602
|
4.6
|
34.7
|
1.0
|
|
O2B
|
C:ATP602
|
4.7
|
32.5
|
1.0
|
|
O1G
|
C:ATP602
|
4.7
|
32.1
|
1.0
|
|
C
|
C:SER151
|
4.7
|
42.1
|
1.0
|
|
OD2
|
C:ASP398
|
4.7
|
58.9
|
1.0
|
|
CB
|
C:SER151
|
4.8
|
36.5
|
1.0
|
|
CB
|
C:ASP398
|
4.8
|
48.5
|
1.0
|
|
O
|
C:HOH750
|
4.9
|
39.1
|
1.0
|
|
CG
|
C:ASP398
|
4.9
|
55.6
|
1.0
|
|
CA
|
C:ASP87
|
5.0
|
33.1
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 5 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:39.8
occ:0.00
|
O2A
|
D:ATP602
|
2.3
|
42.5
|
1.0
|
|
OD1
|
D:ASP87
|
2.4
|
45.4
|
1.0
|
|
O1B
|
D:ATP602
|
2.4
|
48.4
|
1.0
|
|
O3G
|
D:ATP602
|
2.4
|
42.1
|
1.0
|
|
CG
|
D:ASP87
|
3.1
|
44.0
|
1.0
|
|
OD2
|
D:ASP87
|
3.2
|
43.8
|
1.0
|
|
PB
|
D:ATP602
|
3.2
|
35.6
|
1.0
|
|
O3B
|
D:ATP602
|
3.4
|
32.0
|
1.0
|
|
PA
|
D:ATP602
|
3.5
|
36.0
|
1.0
|
|
PG
|
D:ATP602
|
3.6
|
47.1
|
1.0
|
|
O3A
|
D:ATP602
|
3.6
|
33.2
|
1.0
|
|
O
|
D:HOH722
|
4.0
|
44.7
|
1.0
|
|
O
|
D:SER151
|
4.0
|
53.3
|
1.0
|
|
OG
|
D:SER151
|
4.0
|
48.8
|
1.0
|
|
C5'
|
D:ATP602
|
4.2
|
31.9
|
1.0
|
|
O2G
|
D:ATP602
|
4.3
|
48.6
|
1.0
|
|
O5'
|
D:ATP602
|
4.4
|
35.3
|
1.0
|
|
O
|
D:HOH739
|
4.4
|
44.2
|
1.0
|
|
O
|
D:HOH728
|
4.4
|
28.6
|
1.0
|
|
N
|
D:GLY88
|
4.5
|
32.0
|
1.0
|
|
CA
|
D:SER151
|
4.5
|
27.2
|
1.0
|
|
CB
|
D:ASP87
|
4.6
|
38.6
|
1.0
|
|
OD2
|
D:ASP398
|
4.6
|
58.2
|
1.0
|
|
O1A
|
D:ATP602
|
4.6
|
34.8
|
1.0
|
|
O2B
|
D:ATP602
|
4.7
|
36.3
|
1.0
|
|
O1G
|
D:ATP602
|
4.7
|
35.7
|
1.0
|
|
CB
|
D:ASP398
|
4.7
|
47.1
|
1.0
|
|
C
|
D:SER151
|
4.7
|
37.0
|
1.0
|
|
CG
|
D:ASP398
|
4.7
|
53.6
|
1.0
|
|
CB
|
D:SER151
|
4.8
|
31.6
|
1.0
|
|
CA
|
D:ASP87
|
5.0
|
32.3
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 6 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg601
b:34.9
occ:0.00
|
O2A
|
E:ATP602
|
2.3
|
38.5
|
1.0
|
|
OD1
|
E:ASP87
|
2.3
|
43.0
|
1.0
|
|
O3G
|
E:ATP602
|
2.3
|
38.4
|
1.0
|
|
O1B
|
E:ATP602
|
2.6
|
40.2
|
1.0
|
|
CG
|
E:ASP87
|
3.1
|
41.3
|
1.0
|
|
OD2
|
E:ASP87
|
3.2
|
38.4
|
1.0
|
|
PB
|
E:ATP602
|
3.3
|
24.4
|
1.0
|
|
O3B
|
E:ATP602
|
3.4
|
26.8
|
1.0
|
|
PG
|
E:ATP602
|
3.5
|
43.8
|
1.0
|
|
PA
|
E:ATP602
|
3.5
|
25.4
|
1.0
|
|
O3A
|
E:ATP602
|
3.6
|
30.4
|
1.0
|
|
O
|
E:SER151
|
4.0
|
48.0
|
1.0
|
|
OG
|
E:SER151
|
4.0
|
48.7
|
1.0
|
|
O2G
|
E:ATP602
|
4.3
|
41.6
|
1.0
|
|
C5'
|
E:ATP602
|
4.3
|
27.5
|
1.0
|
|
O
|
E:HOH716
|
4.4
|
23.7
|
1.0
|
|
O5'
|
E:ATP602
|
4.4
|
30.8
|
1.0
|
|
CA
|
E:SER151
|
4.5
|
27.8
|
1.0
|
|
N
|
E:GLY88
|
4.5
|
31.6
|
1.0
|
|
CB
|
E:ASP87
|
4.5
|
33.4
|
1.0
|
|
O1A
|
E:ATP602
|
4.6
|
28.6
|
1.0
|
|
O1G
|
E:ATP602
|
4.6
|
28.2
|
1.0
|
|
OD2
|
E:ASP398
|
4.6
|
56.5
|
1.0
|
|
C
|
E:SER151
|
4.7
|
36.4
|
1.0
|
|
CB
|
E:ASP398
|
4.7
|
42.0
|
1.0
|
|
CB
|
E:SER151
|
4.8
|
31.2
|
1.0
|
|
O2B
|
E:ATP602
|
4.8
|
34.1
|
1.0
|
|
CG
|
E:ASP398
|
4.9
|
50.7
|
1.0
|
|
CA
|
E:ASP87
|
4.9
|
27.4
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 7 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:40.6
occ:0.00
|
O2A
|
F:ATP602
|
2.3
|
46.4
|
1.0
|
|
OD1
|
F:ASP87
|
2.3
|
46.4
|
1.0
|
|
O3G
|
F:ATP602
|
2.4
|
42.8
|
1.0
|
|
O1B
|
F:ATP602
|
2.4
|
48.6
|
1.0
|
|
CG
|
F:ASP87
|
3.1
|
43.2
|
1.0
|
|
OD2
|
F:ASP87
|
3.1
|
44.2
|
1.0
|
|
PB
|
F:ATP602
|
3.3
|
34.1
|
1.0
|
|
O3B
|
F:ATP602
|
3.5
|
30.3
|
1.0
|
|
PA
|
F:ATP602
|
3.5
|
33.0
|
1.0
|
|
PG
|
F:ATP602
|
3.6
|
46.0
|
1.0
|
|
O3A
|
F:ATP602
|
3.6
|
36.8
|
1.0
|
|
OG
|
F:SER151
|
4.0
|
52.6
|
1.0
|
|
O
|
F:SER151
|
4.0
|
51.9
|
1.0
|
|
C5'
|
F:ATP602
|
4.2
|
31.8
|
1.0
|
|
O
|
F:HOH718
|
4.3
|
32.3
|
1.0
|
|
O
|
F:HOH758
|
4.4
|
47.9
|
1.0
|
|
O5'
|
F:ATP602
|
4.4
|
34.9
|
1.0
|
|
O2G
|
F:ATP602
|
4.4
|
49.2
|
1.0
|
|
N
|
F:GLY88
|
4.5
|
34.7
|
1.0
|
|
CA
|
F:SER151
|
4.5
|
31.2
|
1.0
|
|
CB
|
F:ASP87
|
4.5
|
38.5
|
1.0
|
|
O1G
|
F:ATP602
|
4.6
|
33.7
|
1.0
|
|
O1A
|
F:ATP602
|
4.6
|
35.4
|
1.0
|
|
OD2
|
F:ASP398
|
4.7
|
60.4
|
1.0
|
|
O2B
|
F:ATP602
|
4.7
|
34.8
|
1.0
|
|
C
|
F:SER151
|
4.7
|
40.5
|
1.0
|
|
CB
|
F:ASP398
|
4.8
|
47.8
|
1.0
|
|
CB
|
F:SER151
|
4.8
|
33.9
|
1.0
|
|
CG
|
F:ASP398
|
4.9
|
56.9
|
1.0
|
|
CA
|
F:ASP87
|
5.0
|
32.5
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 8 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg601
b:36.6
occ:0.00
|
OD1
|
H:ASP87
|
2.3
|
43.7
|
1.0
|
|
O2A
|
H:ATP602
|
2.3
|
38.1
|
1.0
|
|
O3G
|
H:ATP602
|
2.4
|
41.1
|
1.0
|
|
O1B
|
H:ATP602
|
2.6
|
44.0
|
1.0
|
|
CG
|
H:ASP87
|
3.1
|
41.8
|
1.0
|
|
OD2
|
H:ASP87
|
3.1
|
37.1
|
1.0
|
|
PB
|
H:ATP602
|
3.3
|
26.5
|
1.0
|
|
O3B
|
H:ATP602
|
3.3
|
29.7
|
1.0
|
|
PG
|
H:ATP602
|
3.5
|
46.9
|
1.0
|
|
PA
|
H:ATP602
|
3.5
|
32.0
|
1.0
|
|
O3A
|
H:ATP602
|
3.5
|
35.4
|
1.0
|
|
OG
|
H:SER151
|
4.0
|
51.9
|
1.0
|
|
O
|
H:SER151
|
4.0
|
52.2
|
1.0
|
|
C5'
|
H:ATP602
|
4.3
|
29.4
|
1.0
|
|
O2G
|
H:ATP602
|
4.4
|
44.4
|
1.0
|
|
O
|
H:HOH720
|
4.4
|
28.4
|
1.0
|
|
O5'
|
H:ATP602
|
4.4
|
32.9
|
1.0
|
|
CA
|
H:SER151
|
4.4
|
29.6
|
1.0
|
|
N
|
H:GLY88
|
4.5
|
32.7
|
1.0
|
|
CB
|
H:ASP87
|
4.5
|
37.5
|
1.0
|
|
O1A
|
H:ATP602
|
4.6
|
32.6
|
1.0
|
|
O1G
|
H:ATP602
|
4.6
|
31.9
|
1.0
|
|
OD2
|
H:ASP398
|
4.7
|
53.7
|
1.0
|
|
C
|
H:SER151
|
4.7
|
38.4
|
1.0
|
|
CB
|
H:ASP398
|
4.7
|
45.0
|
1.0
|
|
CB
|
H:SER151
|
4.8
|
32.9
|
1.0
|
|
O2B
|
H:ATP602
|
4.8
|
31.9
|
1.0
|
|
CG
|
H:ASP398
|
4.9
|
50.9
|
1.0
|
|
CA
|
H:ASP87
|
5.0
|
31.5
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 9 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg601
b:42.6
occ:0.00
|
OD1
|
I:ASP87
|
2.3
|
49.2
|
1.0
|
|
O2A
|
I:ATP602
|
2.3
|
42.4
|
1.0
|
|
O3G
|
I:ATP602
|
2.4
|
51.1
|
1.0
|
|
O1B
|
I:ATP602
|
2.6
|
53.4
|
1.0
|
|
CG
|
I:ASP87
|
3.1
|
47.6
|
1.0
|
|
OD2
|
I:ASP87
|
3.1
|
42.8
|
1.0
|
|
PB
|
I:ATP602
|
3.3
|
36.6
|
1.0
|
|
O3B
|
I:ATP602
|
3.3
|
38.5
|
1.0
|
|
PG
|
I:ATP602
|
3.5
|
45.6
|
1.0
|
|
PA
|
I:ATP602
|
3.5
|
32.7
|
1.0
|
|
O3A
|
I:ATP602
|
3.5
|
43.4
|
1.0
|
|
O
|
I:HOH718
|
3.9
|
44.9
|
1.0
|
|
OG
|
I:SER151
|
4.0
|
55.9
|
1.0
|
|
O
|
I:SER151
|
4.0
|
54.5
|
1.0
|
|
C5'
|
I:ATP602
|
4.3
|
35.4
|
1.0
|
|
O2G
|
I:ATP602
|
4.3
|
48.4
|
1.0
|
|
O
|
I:HOH719
|
4.4
|
35.1
|
1.0
|
|
O5'
|
I:ATP602
|
4.4
|
39.5
|
1.0
|
|
OD2
|
I:ASP398
|
4.4
|
58.6
|
1.0
|
|
CA
|
I:SER151
|
4.4
|
33.6
|
1.0
|
|
N
|
I:GLY88
|
4.5
|
29.4
|
1.0
|
|
CB
|
I:ASP87
|
4.5
|
42.1
|
1.0
|
|
O1A
|
I:ATP602
|
4.6
|
39.9
|
1.0
|
|
O1G
|
I:ATP602
|
4.7
|
33.7
|
1.0
|
|
CG
|
I:ASP398
|
4.7
|
56.9
|
1.0
|
|
CB
|
I:ASP398
|
4.7
|
51.2
|
1.0
|
|
C
|
I:SER151
|
4.7
|
43.6
|
1.0
|
|
O2B
|
I:ATP602
|
4.8
|
34.1
|
1.0
|
|
CB
|
I:SER151
|
4.8
|
38.0
|
1.0
|
|
CA
|
I:ASP87
|
4.9
|
36.3
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 8bmd
Go back to
Magnesium Binding Sites List in 8bmd
Magnesium binding site 10 out
of 14 in the Structure of Groel-Atp Complex Under Continuous Turnover Conditions
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Groel-Atp Complex Under Continuous Turnover Conditions within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg601
b:41.4
occ:0.00
|
O2A
|
J:ATP602
|
2.3
|
47.0
|
1.0
|
|
OD1
|
J:ASP87
|
2.3
|
48.7
|
1.0
|
|
O1B
|
J:ATP602
|
2.4
|
48.5
|
1.0
|
|
O3G
|
J:ATP602
|
2.4
|
43.6
|
1.0
|
|
CG
|
J:ASP87
|
3.1
|
45.2
|
1.0
|
|
OD2
|
J:ASP87
|
3.1
|
44.3
|
1.0
|
|
PB
|
J:ATP602
|
3.3
|
34.6
|
1.0
|
|
O3B
|
J:ATP602
|
3.5
|
31.9
|
1.0
|
|
PA
|
J:ATP602
|
3.5
|
32.8
|
1.0
|
|
PG
|
J:ATP602
|
3.6
|
45.7
|
1.0
|
|
O3A
|
J:ATP602
|
3.6
|
35.2
|
1.0
|
|
OG
|
J:SER151
|
4.0
|
52.1
|
1.0
|
|
O
|
J:SER151
|
4.1
|
51.9
|
1.0
|
|
C5'
|
J:ATP602
|
4.2
|
32.0
|
1.0
|
|
O
|
J:HOH719
|
4.3
|
31.0
|
1.0
|
|
O
|
J:HOH764
|
4.4
|
50.0
|
1.0
|
|
O5'
|
J:ATP602
|
4.4
|
35.1
|
1.0
|
|
O2G
|
J:ATP602
|
4.4
|
48.1
|
1.0
|
|
N
|
J:GLY88
|
4.5
|
34.6
|
1.0
|
|
CB
|
J:ASP87
|
4.5
|
37.6
|
1.0
|
|
CA
|
J:SER151
|
4.5
|
33.6
|
1.0
|
|
O1G
|
J:ATP602
|
4.6
|
35.6
|
1.0
|
|
O1A
|
J:ATP602
|
4.6
|
36.4
|
1.0
|
|
OD2
|
J:ASP398
|
4.7
|
58.5
|
1.0
|
|
O2B
|
J:ATP602
|
4.7
|
37.4
|
1.0
|
|
C
|
J:SER151
|
4.7
|
40.9
|
1.0
|
|
CB
|
J:ASP398
|
4.7
|
48.4
|
1.0
|
|
CB
|
J:SER151
|
4.8
|
36.4
|
1.0
|
|
CG
|
J:ASP398
|
4.8
|
55.6
|
1.0
|
|
CA
|
J:ASP87
|
4.9
|
32.5
|
1.0
|
|
Reference:
S.Torino,
M.Dhurandhar,
A.Stroobants,
R.Claessens,
R.Efremov.
Time-Resolved Cryo-Em Using A Combination of Droplet Microfluidics with on-Demand Jetting Nat.Methods 2023.
ISSN: ESSN 1548-7105
DOI: 10.1038/S41592-023-01967-Z
Page generated: Thu Oct 3 19:44:24 2024
|
