Magnesium in PDB 8g27: Hybrid Aspen Cellulose Synthase-8 Bound to Udp

All present enzymatic activity of Hybrid Aspen Cellulose Synthase-8 Bound to Udp:
2.4.1.12;

The binding sites of Magnesium atom in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp (pdb code 8g27). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp, PDB code: 8g27:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1002 b:109.7 occ:1.00 MG D:MG1003 1.5 109.8 1.0 O2A D:UDP1001 3.6 115.1 1.0 OD2 D:ASP462 3.8 68.6 1.0 HB2 D:ASP462 4.5 61.6 1.0 H5'2 D:UDP1001 4.6 114.7 1.0 O3A D:UDP1001 4.7 119.3 1.0 HE2 D:HIS463 4.7 55.9 1.0 PA D:UDP1001 4.7 118.9 1.0 CG D:ASP462 4.8 66.0 1.0 OD2 D:ASP460 4.8 66.4 1.0

Magnesium binding site 2 out of 6 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1003 b:109.8 occ:1.00 MG D:MG1002 1.5 109.7 1.0 O2A D:UDP1001 2.8 115.1 1.0 OD2 D:ASP462 3.0 68.6 1.0 H3' D:UDP1001 3.9 115.0 1.0 PA D:UDP1001 4.1 118.9 1.0 H5'2 D:UDP1001 4.1 114.7 1.0 CG D:ASP462 4.2 66.0 1.0 O5' D:UDP1001 4.4 119.2 1.0 HB2 D:ASP462 4.4 61.6 1.0 O3A D:UDP1001 4.5 119.3 1.0 C5' D:UDP1001 4.7 118.0 1.0 C3' D:UDP1001 4.7 115.9 1.0 OD2 D:ASP460 4.9 66.4 1.0 CB D:ASP462 4.9 59.5 1.0 HO3' D:UDP1001 4.9 112.9 1.0

Magnesium binding site 3 out of 6 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1002 b:111.5 occ:1.00 MG I:MG1003 1.5 121.9 1.0 O1A I:UDP1001 3.7 85.7 1.0 O3B I:UDP1001 4.4 84.5 1.0 HE2 I:HIS463 4.8 46.7 1.0 OE1 I:GLN714 4.9 96.5 1.0

Magnesium binding site 4 out of 6 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1003 b:121.9 occ:1.00 MG I:MG1002 1.5 111.5 1.0 O1A I:UDP1001 3.7 85.7 1.0 HE2 I:HIS463 3.8 46.7 1.0 OD2 I:ASP460 4.3 54.2 1.0 NE2 I:HIS463 4.5 50.9 1.0 HD2 I:HIS463 4.6 44.2 1.0 CD2 I:HIS463 4.9 42.0 1.0 O3B I:UDP1001 4.9 84.5 1.0 HB3 I:ASP462 5.0 43.5 1.0

Magnesium binding site 5 out of 6 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1002 b:86.5 occ:1.00 MG C:MG1003 1.5 100.7 1.0 O C:HOH1101 2.3 68.6 1.0 O1B C:UDP1001 2.4 90.6 1.0 O C:HOH1102 3.0 53.6 1.0 OD2 C:ASP462 3.3 62.9 1.0 PB C:UDP1001 3.8 106.7 1.0 H5'2 C:UDP1001 3.9 87.2 1.0 H3' C:UDP1001 4.0 87.2 1.0 O3A C:UDP1001 4.2 96.6 1.0 O1A C:UDP1001 4.4 86.8 1.0 O3B C:UDP1001 4.4 90.0 1.0 CG C:ASP462 4.5 58.1 1.0 HB2 C:ASP462 4.8 55.6 1.0 C5' C:UDP1001 4.8 90.3 1.0 PA C:UDP1001 4.8 102.3 1.0 O2B C:UDP1001 4.9 97.6 1.0 C3' C:UDP1001 5.0 90.1 1.0 OD2 C:ASP460 5.0 66.6 1.0

Magnesium binding site 6 out of 6 in the Hybrid Aspen Cellulose Synthase-8 Bound to Udp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Hybrid Aspen Cellulose Synthase-8 Bound to Udp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1003 b:100.7 occ:1.00 MG C:MG1002 1.5 86.5 1.0 O C:HOH1102 2.4 53.6 1.0 OD2 C:ASP462 2.4 62.9 1.0 O C:HOH1101 2.7 68.6 1.0 HB2 C:ASP462 3.4 55.6 1.0 CG C:ASP462 3.5 58.1 1.0 O1B C:UDP1001 3.7 90.6 1.0 CB C:ASP462 3.9 53.2 1.0 HB3 C:ASP462 4.3 55.2 1.0 OD1 C:ASP462 4.5 58.4 1.0 H C:ASP462 4.6 55.6 1.0 HD2 C:HIS463 4.7 48.8 1.0 HB3 C:ASP460 4.7 55.4 1.0 OD2 C:ASP460 4.8 66.6 1.0 H3' C:UDP1001 4.8 87.2 1.0 H5'2 C:UDP1001 4.8 87.2 1.0 HE2 C:HIS463 4.9 49.0 1.0 PB C:UDP1001 5.0 106.7 1.0

P.Verma, A.L.Kwansa, R.Ho, Y.G.Yingling, J.Zimmer. Insights Into Substrate Coordination and Glycosyl Transfer of Poplar Cellulose Synthase-8. Biorxiv 2023.
ISSN: ISSN 2692-8205
PubMed: 36798277
DOI: 10.1101/2023.02.07.527505