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Magnesium in PDB 8ohk: Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01

Enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01

All present enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01:
2.7.7.85;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01, PDB code: 8ohk was solved by T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.81 / 1.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.07, 39.19, 67.91, 90, 94.95, 90
R / Rfree (%) 16.6 / 19.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01 (pdb code 8ohk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01, PDB code: 8ohk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8ohk

Go back to Magnesium Binding Sites List in 8ohk
Magnesium binding site 1 out of 2 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:30.0
occ:1.00
O A:HOH482 1.7 38.2 1.0
O A:HOH407 2.0 51.2 1.0
O A:HOH511 2.0 47.1 1.0
O A:HOH490 2.1 45.8 1.0
O A:HOH411 2.1 43.0 1.0
NE2 A:HIS170 2.2 30.3 1.0
CE1 A:HIS170 3.2 30.6 1.0
CD2 A:HIS170 3.3 30.1 1.0
HE1 A:HIS170 3.4 36.8 1.0
HD2 A:HIS170 3.4 36.1 1.0
H A:ASN166 3.4 33.7 1.0
OD1 A:ASP171 4.0 36.9 1.0
OD2 A:ASP171 4.1 36.4 1.0
HB3 A:PRO165 4.2 34.9 1.0
N A:ASN166 4.2 28.1 1.0
HA A:PRO165 4.3 33.6 1.0
ND1 A:HIS170 4.3 27.6 1.0
CG A:HIS170 4.4 27.7 1.0
HA A:ASN166 4.4 35.8 1.0
CG A:ASP171 4.4 35.2 1.0
HH22 A:ARG203 4.5 45.0 1.0
CA A:ASN166 4.9 29.8 1.0
CA A:PRO165 4.9 28.0 1.0
CB A:PRO165 5.0 29.0 1.0

Magnesium binding site 2 out of 2 in 8ohk

Go back to Magnesium Binding Sites List in 8ohk
Magnesium binding site 2 out of 2 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:18.4
occ:1.00
O B:HOH524 2.0 30.0 1.0
O B:HOH526 2.1 29.9 1.0
O B:HOH523 2.1 29.9 1.0
O B:HOH500 2.1 29.9 1.0
O B:HOH461 2.1 29.9 1.0
O B:HOH513 2.1 29.9 1.0
HB2 B:GLU239 3.8 23.5 1.0
O B:HOH460 4.1 21.3 1.0
O B:ARG238 4.1 17.8 1.0
O B:HOH476 4.3 46.7 1.0
CB B:GLU239 4.8 19.6 1.0
HG3 B:GLU239 5.0 23.4 1.0

Reference:

T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner. Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X-Entry H01 To Be Published.
Page generated: Fri Oct 4 14:49:03 2024

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