Atomistry » Magnesium » PDB 8of5-8ojk » 8ohk
Atomistry »
  Magnesium »
    PDB 8of5-8ojk »
      8ohk »

Magnesium in PDB 8ohk: Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01

Enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01

All present enzymatic activity of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01:
2.7.7.85;

Protein crystallography data

The structure of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01, PDB code: 8ohk was solved by T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.81 / 1.26
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 119.07, 39.19, 67.91, 90, 94.95, 90
R / Rfree (%) 16.6 / 19.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01 (pdb code 8ohk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01, PDB code: 8ohk:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8ohk

Go back to Magnesium Binding Sites List in 8ohk
Magnesium binding site 1 out of 2 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:30.0
occ:1.00
O A:HOH482 1.7 38.2 1.0
O A:HOH407 2.0 51.2 1.0
O A:HOH511 2.0 47.1 1.0
O A:HOH490 2.1 45.8 1.0
O A:HOH411 2.1 43.0 1.0
NE2 A:HIS170 2.2 30.3 1.0
CE1 A:HIS170 3.2 30.6 1.0
CD2 A:HIS170 3.3 30.1 1.0
HE1 A:HIS170 3.4 36.8 1.0
HD2 A:HIS170 3.4 36.1 1.0
H A:ASN166 3.4 33.7 1.0
OD1 A:ASP171 4.0 36.9 1.0
OD2 A:ASP171 4.1 36.4 1.0
HB3 A:PRO165 4.2 34.9 1.0
N A:ASN166 4.2 28.1 1.0
HA A:PRO165 4.3 33.6 1.0
ND1 A:HIS170 4.3 27.6 1.0
CG A:HIS170 4.4 27.7 1.0
HA A:ASN166 4.4 35.8 1.0
CG A:ASP171 4.4 35.2 1.0
HH22 A:ARG203 4.5 45.0 1.0
CA A:ASN166 4.9 29.8 1.0
CA A:PRO165 4.9 28.0 1.0
CB A:PRO165 5.0 29.0 1.0

Magnesium binding site 2 out of 2 in 8ohk

Go back to Magnesium Binding Sites List in 8ohk
Magnesium binding site 2 out of 2 in the Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X- Entry H01 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:18.4
occ:1.00
O B:HOH524 2.0 30.0 1.0
O B:HOH526 2.1 29.9 1.0
O B:HOH523 2.1 29.9 1.0
O B:HOH500 2.1 29.9 1.0
O B:HOH461 2.1 29.9 1.0
O B:HOH513 2.1 29.9 1.0
HB2 B:GLU239 3.8 23.5 1.0
O B:HOH460 4.1 21.3 1.0
O B:ARG238 4.1 17.8 1.0
O B:HOH476 4.3 46.7 1.0
CB B:GLU239 4.8 19.6 1.0
HG3 B:GLU239 5.0 23.4 1.0

Reference:

T.B.Garbers, P.Neumann, J.Wollenhaupt, M.S.Weiss, R.Ficner. Pandda Analysis Group Deposition -- Cdaa in Complex with Fragment F2X-Entry H01 To Be Published.
Page generated: Fri Oct 4 14:49:03 2024

Last articles

Mg in 6ZE7
Mg in 6ZHG
Mg in 6ZHF
Mg in 6ZGA
Mg in 6ZE6
Mg in 6ZEC
Mg in 6ZE5
Mg in 6ZCJ
Mg in 6ZE4
Mg in 6ZE3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy