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Magnesium in PDB 1hmv: The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1

Enzymatic activity of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1

All present enzymatic activity of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1:
2.7.7.49;

Protein crystallography data

The structure of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1, PDB code: 1hmv was solved by D.W.Rodgers, S.J.Gamblin, B.A.Harris, S.Ray, J.S.Culp, B.Hellmig, D.J.Woolf, C.Debouck, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 3.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 168.700, 162.800, 331.800, 90.00, 105.70, 90.00
R / Rfree (%) 25.4 / 29.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 (pdb code 1hmv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1, PDB code: 1hmv:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1hmv

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Magnesium binding site 1 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:73.1
occ:1.00
 OE2 A:GLU478 1.8 61.8 1.0
OD2 A:ASP498 1.8 56.0 1.0
CG A:ASP498 2.7 67.7 1.0
CD A:GLU478 3.0 73.6 1.0
OD1 A:ASP498 3.1 73.1 1.0
OD1 A:ASP443 3.1 90.2 1.0
O A:ASP498 3.4 0.1 1.0
OE1 A:GLU478 3.8 71.7 1.0
CG A:ASP443 3.9 86.0 1.0
OD2 A:ASP443 3.9 92.1 1.0
CG A:GLU478 4.0 78.5 1.0
CB A:ASP498 4.0 68.2 1.0
O A:GLY444 4.2 78.5 1.0
C A:ASP498 4.4 91.1 1.0
CA A:ASP498 4.8 80.0 1.0

Magnesium binding site 2 out of 4 in 1hmv

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Magnesium binding site 2 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:73.1
occ:1.00
 OE2 C:GLU478 1.8 61.8 1.0
OD2 C:ASP498 1.8 56.0 1.0
CG C:ASP498 2.7 67.7 1.0
CD C:GLU478 3.0 73.6 1.0
OD1 C:ASP498 3.1 73.1 1.0
OD1 C:ASP443 3.1 90.2 1.0
O C:ASP498 3.4 0.1 1.0
OE1 C:GLU478 3.8 71.7 1.0
CG C:ASP443 3.9 86.0 1.0
OD2 C:ASP443 3.9 92.1 1.0
CG C:GLU478 4.0 78.5 1.0
CB C:ASP498 4.0 68.2 1.0
O C:GLY444 4.2 78.5 1.0
C C:ASP498 4.4 91.1 1.0
CA C:ASP498 4.8 80.0 1.0

Magnesium binding site 3 out of 4 in 1hmv

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Magnesium binding site 3 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg501

b:73.1
occ:1.00
 OE2 E:GLU478 1.8 61.8 1.0
OD2 E:ASP498 1.8 56.0 1.0
CG E:ASP498 2.7 67.7 1.0
CD E:GLU478 3.0 73.6 1.0
OD1 E:ASP498 3.1 73.1 1.0
OD1 E:ASP443 3.1 90.2 1.0
O E:ASP498 3.4 0.1 1.0
OE1 E:GLU478 3.8 71.7 1.0
CG E:ASP443 3.9 86.0 1.0
OD2 E:ASP443 3.9 92.1 1.0
CG E:GLU478 4.0 78.5 1.0
CB E:ASP498 4.0 68.2 1.0
O E:GLY444 4.2 78.5 1.0
C E:ASP498 4.4 91.1 1.0
CA E:ASP498 4.8 80.0 1.0

Magnesium binding site 4 out of 4 in 1hmv

Go back to Magnesium Binding Sites List in 1hmv
Magnesium binding site 4 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg501

b:73.1
occ:1.00
 OE2 G:GLU478 1.7 61.8 1.0
OD2 G:ASP498 1.8 56.0 1.0
CG G:ASP498 2.7 67.7 1.0
CD G:GLU478 3.0 73.6 1.0
OD1 G:ASP498 3.1 73.1 1.0
OD1 G:ASP443 3.1 90.2 1.0
O G:ASP498 3.4 0.1 1.0
OE1 G:GLU478 3.8 71.7 1.0
CG G:ASP443 3.9 86.0 1.0
OD2 G:ASP443 3.9 92.1 1.0
CG G:GLU478 4.0 78.5 1.0
CB G:ASP498 4.0 68.2 1.0
O G:GLY444 4.2 78.5 1.0
C G:ASP498 4.4 91.1 1.0
CA G:ASP498 4.8 80.0 1.0

Reference:

D.W.Rodgers, S.J.Gamblin, B.A.Harris, S.Ray, J.S.Culp, B.Hellmig, D.J.Woolf, C.Debouck, S.C.Harrison. The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1. Proc.Natl.Acad.Sci.Usa V. 92 1222 1995.
ISSN: ISSN 0027-8424
PubMed: 7532306
DOI: 10.1073/PNAS.92.4.1222
Page generated: Tue Aug 13 03:59:05 2024

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