Atomistry » Magnesium » PDB 1h7u-1hxa » 1hmv
Atomistry »
  Magnesium »
    PDB 1h7u-1hxa »
      1hmv »

Magnesium in PDB 1hmv: The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1

Enzymatic activity of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1

All present enzymatic activity of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1:
2.7.7.49;

Protein crystallography data

The structure of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1, PDB code: 1hmv was solved by D.W.Rodgers, S.J.Gamblin, B.A.Harris, S.Ray, J.S.Culp, B.Hellmig, D.J.Woolf, C.Debouck, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 3.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 168.700, 162.800, 331.800, 90.00, 105.70, 90.00
R / Rfree (%) 25.4 / 29.7

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 (pdb code 1hmv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1, PDB code: 1hmv:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 1hmv

Go back to Magnesium Binding Sites List in 1hmv
Magnesium binding site 1 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg501

b:73.1
occ:1.00
 OE2 A:GLU478 1.8 61.8 1.0
OD2 A:ASP498 1.8 56.0 1.0
CG A:ASP498 2.7 67.7 1.0
CD A:GLU478 3.0 73.6 1.0
OD1 A:ASP498 3.1 73.1 1.0
OD1 A:ASP443 3.1 90.2 1.0
O A:ASP498 3.4 0.1 1.0
OE1 A:GLU478 3.8 71.7 1.0
CG A:ASP443 3.9 86.0 1.0
OD2 A:ASP443 3.9 92.1 1.0
CG A:GLU478 4.0 78.5 1.0
CB A:ASP498 4.0 68.2 1.0
O A:GLY444 4.2 78.5 1.0
C A:ASP498 4.4 91.1 1.0
CA A:ASP498 4.8 80.0 1.0

Magnesium binding site 2 out of 4 in 1hmv

Go back to Magnesium Binding Sites List in 1hmv
Magnesium binding site 2 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg501

b:73.1
occ:1.00
 OE2 C:GLU478 1.8 61.8 1.0
OD2 C:ASP498 1.8 56.0 1.0
CG C:ASP498 2.7 67.7 1.0
CD C:GLU478 3.0 73.6 1.0
OD1 C:ASP498 3.1 73.1 1.0
OD1 C:ASP443 3.1 90.2 1.0
O C:ASP498 3.4 0.1 1.0
OE1 C:GLU478 3.8 71.7 1.0
CG C:ASP443 3.9 86.0 1.0
OD2 C:ASP443 3.9 92.1 1.0
CG C:GLU478 4.0 78.5 1.0
CB C:ASP498 4.0 68.2 1.0
O C:GLY444 4.2 78.5 1.0
C C:ASP498 4.4 91.1 1.0
CA C:ASP498 4.8 80.0 1.0

Magnesium binding site 3 out of 4 in 1hmv

Go back to Magnesium Binding Sites List in 1hmv
Magnesium binding site 3 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg501

b:73.1
occ:1.00
 OE2 E:GLU478 1.8 61.8 1.0
OD2 E:ASP498 1.8 56.0 1.0
CG E:ASP498 2.7 67.7 1.0
CD E:GLU478 3.0 73.6 1.0
OD1 E:ASP498 3.1 73.1 1.0
OD1 E:ASP443 3.1 90.2 1.0
O E:ASP498 3.4 0.1 1.0
OE1 E:GLU478 3.8 71.7 1.0
CG E:ASP443 3.9 86.0 1.0
OD2 E:ASP443 3.9 92.1 1.0
CG E:GLU478 4.0 78.5 1.0
CB E:ASP498 4.0 68.2 1.0
O E:GLY444 4.2 78.5 1.0
C E:ASP498 4.4 91.1 1.0
CA E:ASP498 4.8 80.0 1.0

Magnesium binding site 4 out of 4 in 1hmv

Go back to Magnesium Binding Sites List in 1hmv
Magnesium binding site 4 out of 4 in the The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg501

b:73.1
occ:1.00
 OE2 G:GLU478 1.7 61.8 1.0
OD2 G:ASP498 1.8 56.0 1.0
CG G:ASP498 2.7 67.7 1.0
CD G:GLU478 3.0 73.6 1.0
OD1 G:ASP498 3.1 73.1 1.0
OD1 G:ASP443 3.1 90.2 1.0
O G:ASP498 3.4 0.1 1.0
OE1 G:GLU478 3.8 71.7 1.0
CG G:ASP443 3.9 86.0 1.0
OD2 G:ASP443 3.9 92.1 1.0
CG G:GLU478 4.0 78.5 1.0
CB G:ASP498 4.0 68.2 1.0
O G:GLY444 4.2 78.5 1.0
C G:ASP498 4.4 91.1 1.0
CA G:ASP498 4.8 80.0 1.0

Reference:

D.W.Rodgers, S.J.Gamblin, B.A.Harris, S.Ray, J.S.Culp, B.Hellmig, D.J.Woolf, C.Debouck, S.C.Harrison. The Structure of Unliganded Reverse Transcriptase From the Human Immunodeficiency Virus Type 1. Proc.Natl.Acad.Sci.Usa V. 92 1222 1995.
ISSN: ISSN 0027-8424
PubMed: 7532306
DOI: 10.1073/PNAS.92.4.1222
Page generated: Sat Aug 9 21:30:03 2025

Last articles

Mg in 2A6E
Mg in 2A5Z
Mg in 2A5L
Mg in 2A5Y
Mg in 2A5J
Mg in 2A43
Mg in 2A5G
Mg in 2A5D
Mg in 2A5F
Mg in 2A42
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy