Magnesium in PDB 207d: Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna

The binding sites of Magnesium atom in the Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna (pdb code 207d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna, PDB code: 207d:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg19 b:0.2 occ:1.00 O9 A:CRH13 1.8 0.2 1.0 O9 B:CRH17 1.9 0.2 1.0 O1 A:CRH13 2.3 0.2 1.0 O1 B:CRH17 2.3 0.2 1.0 C9 A:CRH13 3.0 0.2 1.0 HO8 B:CRH17 3.1 0.2 1.0 C9 B:CRH17 3.1 0.2 1.0 C1 A:CRH13 3.3 0.2 1.0 C1 B:CRH17 3.3 0.2 1.0 H5' A:DT5 3.4 0.3 1.0 C13 A:CRH13 3.5 0.2 1.0 C13 B:CRH17 3.6 0.2 1.0 H2'' A:DC4 3.8 0.2 1.0 H1 B:DDA18A 3.9 0.2 1.0 H1' A:DC4 3.9 0.3 1.0 H1 A:DDA14A 3.9 0.3 1.0 O8 A:CRH13 3.9 0.2 1.0 O8 B:CRH17 4.0 0.2 1.0 H22 A:DG3 4.0 0.3 1.0 O4' A:DT5 4.1 0.2 1.0 C12 A:CRH13 4.2 0.2 1.0 H1' B:DC8 4.2 0.2 1.0 H4' A:DT5 4.2 0.3 1.0 C12 B:CRH17 4.3 0.2 1.0 C5' A:DT5 4.3 0.3 1.0 O2 B:DC8 4.3 0.3 1.0 O4' B:DT9 4.3 0.2 1.0 O2 A:DC4 4.3 0.2 1.0 H21 A:DG3 4.3 0.2 1.0 C4' A:DT5 4.4 0.2 1.0 N2 A:DG3 4.5 0.2 1.0 H5' B:DT9 4.5 0.3 1.0 C8 A:CRH13 4.5 0.2 1.0 C2' A:DC4 4.6 0.2 1.0 C8 B:CRH17 4.6 0.2 1.0 C2 A:CRH13 4.6 0.2 1.0 C2 B:CRH17 4.7 0.2 1.0 HO8 A:CRH13 4.7 0.3 1.0 H2'' B:DC8 4.7 0.2 1.0 H22 B:DG7 4.8 0.2 1.0 C1' A:DC4 4.8 0.2 1.0 H22 B:DDA18A 4.8 0.2 1.0 C1 B:DDA18A 4.8 0.2 1.0 H21 B:DG7 4.8 0.2 1.0 C1 A:DDA14A 4.8 0.2 1.0 O1 B:DDA18A 4.9 0.2 1.0 H2' A:DC4 4.9 0.3 1.0 H3 B:DDA18A 4.9 0.3 1.0 O1 A:DDA14A 4.9 0.2 1.0 C14 A:CRH13 4.9 0.2 1.0 H21 A:CRH13 4.9 0.2 1.0 H4' B:DT9 5.0 0.2 1.0 H5'' A:DT5 5.0 0.3 1.0

Magnesium binding site 2 out of 2 in the Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg29 b:0.2 occ:1.00 O9 B:CRH23 1.8 0.3 1.0 O9 A:CRH27 1.9 0.2 1.0 O1 B:CRH23 2.3 0.2 1.0 O1 A:CRH27 2.3 0.2 1.0 C9 B:CRH23 3.0 0.2 1.0 HO8 A:CRH27 3.1 0.2 1.0 C9 A:CRH27 3.1 0.2 1.0 C1 B:CRH23 3.3 0.2 1.0 C1 A:CRH27 3.3 0.2 1.0 H5' B:DT5 3.4 0.3 1.0 C13 B:CRH23 3.5 0.2 1.0 C13 A:CRH27 3.6 0.2 1.0 H2'' B:DC4 3.8 0.2 1.0 H1 A:DDA28A 3.9 0.2 1.0 H1' B:DC4 3.9 0.3 1.0 O8 B:CRH23 3.9 0.2 1.0 H1 B:DDA24A 3.9 0.2 1.0 O8 A:CRH27 4.0 0.2 1.0 H22 B:DG3 4.0 0.3 1.0 O4' B:DT5 4.1 0.2 1.0 C12 B:CRH23 4.2 0.2 1.0 H1' A:DC8 4.2 0.2 1.0 H4' B:DT5 4.2 0.3 1.0 C12 A:CRH27 4.3 0.2 1.0 O2 A:DC8 4.3 0.3 1.0 C5' B:DT5 4.3 0.2 1.0 O4' A:DT9 4.3 0.2 1.0 O2 B:DC4 4.3 0.2 1.0 H21 B:DG3 4.3 0.2 1.0 C4' B:DT5 4.4 0.2 1.0 H5' A:DT9 4.5 0.3 1.0 N2 B:DG3 4.5 0.2 1.0 C8 B:CRH23 4.5 0.2 1.0 C2' B:DC4 4.6 0.2 1.0 C8 A:CRH27 4.6 0.2 1.0 C2 B:CRH23 4.6 0.2 1.0 C2 A:CRH27 4.7 0.2 1.0 HO8 B:CRH23 4.7 0.3 1.0 H2'' A:DC8 4.7 0.2 1.0 H22 A:DG7 4.8 0.2 1.0 C1' B:DC4 4.8 0.2 1.0 H22 A:DDA28A 4.8 0.3 1.0 C1 A:DDA28A 4.8 0.2 1.0 H21 A:DG7 4.8 0.3 1.0 C1 B:DDA24A 4.9 0.2 1.0 O1 A:DDA28A 4.9 0.2 1.0 H2' B:DC4 4.9 0.3 1.0 H3 A:DDA28A 4.9 0.2 1.0 O1 B:DDA24A 4.9 0.2 1.0 C14 B:CRH23 4.9 0.2 1.0 H21 B:CRH23 4.9 0.2 1.0 H4' A:DT9 5.0 0.2 1.0 H5'' B:DT5 5.0 0.3 1.0

M.Sastry, R.Fiala, D.J.Patel. Solution Structure of Mithramycin Dimers Bound to Partially Overlapping Sites on Dna. J.Mol.Biol. V. 251 674 1995.
ISSN: ISSN 0022-2836
PubMed: 7666419
DOI: 10.1006/JMBI.1995.0464