Magnesium in PDB 2ajp: Crystal Structure of A Human Pyridoxal Kinase

All present enzymatic activity of Crystal Structure of A Human Pyridoxal Kinase:
2.7.1.35;

The structure of Crystal Structure of A Human Pyridoxal Kinase, PDB code: 2ajp was solved by S.Ismail, S.Dimov, A.Atanassova, W.Tempel, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.08 / 2.50
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	92.132, 114.971, 169.261, 90.00, 90.00, 90.00
R / Rfree (%)	24.1 / 28.3

The binding sites of Magnesium atom in the Crystal Structure of A Human Pyridoxal Kinase (pdb code 2ajp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Human Pyridoxal Kinase, PDB code: 2ajp:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Human Pyridoxal Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Human Pyridoxal Kinase within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:42.1 occ:1.00 O1B A:ANP501 2.0 18.7 1.0 OD2 A:ASP118 2.0 43.6 1.0 O2A A:ANP501 2.2 28.6 1.0 CG A:ASP118 3.0 43.7 1.0 PB A:ANP501 3.3 22.4 1.0 OD1 A:ASP118 3.4 43.8 1.0 PA A:ANP501 3.4 27.2 1.0 O3A A:ANP501 3.7 28.3 1.0 OG A:SER187 3.9 33.7 1.0 O2B A:ANP501 4.1 21.5 1.0 ND2 A:ASN150 4.1 25.1 1.0 O1A A:ANP501 4.2 27.7 1.0 O1G A:ANP501 4.3 27.6 1.0 CB A:ASP118 4.4 44.5 1.0 O5' A:ANP501 4.6 30.7 1.0 N3B A:ANP501 4.6 25.0 1.0 CB A:ASN150 4.9 28.4 1.0 CB A:SER187 4.9 32.0 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Human Pyridoxal Kinase


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Human Pyridoxal Kinase within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1401 b:29.4 occ:1.00 O2A B:ANP1501 2.0 29.4 1.0 OD2 B:ASP118 2.0 29.5 1.0 O1B B:ANP1501 2.2 23.7 1.0 CG B:ASP118 3.0 35.3 1.0 PB B:ANP1501 3.2 23.2 1.0 PA B:ANP1501 3.2 26.6 1.0 OD1 B:ASP118 3.3 35.9 1.0 O3A B:ANP1501 3.4 26.9 1.0 O2B B:ANP1501 3.8 20.1 1.0 OG B:SER187 3.8 26.5 1.0 ND2 B:ASN150 3.9 27.5 1.0 O1A B:ANP1501 4.2 29.9 1.0 O2G B:ANP1501 4.2 32.3 1.0 CB B:ASP118 4.3 35.6 1.0 O5' B:ANP1501 4.5 32.0 1.0 N3B B:ANP1501 4.6 21.9 1.0 UNK B:UNX1419 4.7 2.0 0.0 CB B:ASN150 4.7 27.8 1.0 CG B:ASN150 4.8 31.7 1.0 CB B:SER187 4.8 28.1 1.0 PG B:ANP1501 4.9 36.3 1.0

S.Ismail, S.Dimov, A.Atanassova, W.Tempel, C.Arrowsmith, A.Edwards, M.Sundstrom, J.Weigelt, A.Bochkarev, H.Park, Structural Genomics Consortium (Sgc). Crystal Structure of A Human Pyridoxal Kinase To Be Published.