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Magnesium in PDB 2by3: Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection

Enzymatic activity of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection

All present enzymatic activity of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection:
3.2.1.1;

Protein crystallography data

The structure of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection, PDB code: 2by3 was solved by H.-K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.5
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 59.505, 66.645, 152.996, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection (pdb code 2by3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection, PDB code: 2by3:

Magnesium binding site 1 out of 1 in 2by3

Go back to Magnesium Binding Sites List in 2by3
Magnesium binding site 1 out of 1 in the Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1608

b:18.4
occ:0.85
 O A:HOH2843 2.1 29.6 1.0
OD1 A:ASP540 2.2 18.1 1.0
CG A:ASP540 3.3 16.1 1.0
OD2 A:ASP540 3.6 16.1 1.0
NZ A:LYS572 4.1 25.3 0.5
N A:GLY541 4.2 13.1 1.0
O A:HOH2847 4.3 18.1 1.0
O A:HOH2844 4.3 21.6 1.0
O A:HOH2846 4.3 40.8 1.0
CE A:LYS572 4.3 24.5 0.5
C A:ASP540 4.4 12.3 1.0
CB A:ASP540 4.6 12.2 1.0
CA A:GLY541 4.6 13.1 1.0
CD A:LYS572 4.7 22.4 0.5
CA A:ASP540 4.7 12.1 1.0
O A:ASP540 4.8 12.2 1.0
O A:HOH2845 4.9 33.5 1.0

Reference:

H.-K.S.Leiros, J.Timmins, R.B.G.Ravelli, S.M.Mcsweeney. Is Radiation Damage Dependent on the Dose-Rate Used During Macromolecular Crystallography Data Collection? Acta Crystallogr.,Sect.D V. 62 125 2006.
ISSN: ISSN 0907-4449
PubMed: 16421442
DOI: 10.1107/S0907444905033627
Page generated: Sun Aug 10 10:10:37 2025

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