Magnesium in PDB 2c1h: The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor

All present enzymatic activity of The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor:
4.2.1.24;

The structure of The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor, PDB code: 2c1h was solved by L.Coates, G.Beaven, P.T.Erskine, S.Beale, S.P.Wood, P.M.Shoolingin-Jordan, J.B.Cooper, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	89.44 / 2.6
Space group	P 4 21 2
Cell size a, b, c (Å), α, β, γ (°)	126.480, 126.480, 81.850, 90.00, 90.00, 90.00
R / Rfree (%)	26 / 32

The binding sites of Magnesium atom in the The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor (pdb code 2c1h). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor, PDB code: 2c1h:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1329 b:53.5 occ:1.00 O A:HOH2070 1.9 10.6 1.0 O A:HOH2096 1.9 28.5 1.0 O A:HOH2071 2.0 33.5 1.0 OE1 A:GLU238 2.2 30.8 1.0 O A:HOH2072 2.5 12.4 1.0 NH1 A:ARG176 3.2 29.7 1.0 CD A:GLU238 3.3 30.4 1.0 OE2 A:GLU238 3.8 30.6 1.0 O A:HOH2074 3.8 24.8 1.0 OD1 A:ASP242 3.9 31.5 1.0 O A:MET173 3.9 32.2 1.0 O A:HOH2069 4.0 19.0 1.0 OD2 A:ASP242 4.1 31.2 1.0 O A:ALA198 4.3 29.0 1.0 CG A:ASP242 4.4 31.0 1.0 SD A:MET172 4.5 29.7 1.0 CZ A:ARG176 4.5 29.7 1.0 O A:HOH2103 4.6 32.1 1.0 O A:GLU238 4.6 29.9 1.0 CG A:GLU238 4.6 30.0 1.0 C A:MET173 4.7 32.0 1.0 CE A:MET172 4.7 29.7 1.0 OD1 A:ASP174 4.8 33.2 1.0 CB A:GLU238 4.8 29.8 1.0 CA A:ASP174 4.8 32.3 1.0

Magnesium binding site 2 out of 2 in the The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The X-Ray Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1329 b:41.3 occ:1.00 O B:HOH2095 1.8 41.8 1.0 O B:HOH2091 1.9 43.5 1.0 O B:HOH2071 2.3 30.7 1.0 OE1 B:GLU238 2.4 30.2 1.0 O B:HOH2070 2.6 23.4 1.0 OD1 B:ASP242 3.3 30.4 1.0 NH1 B:ARG176 3.3 29.5 1.0 CD B:GLU238 3.5 29.5 1.0 OD2 B:ASP242 3.7 31.2 1.0 CG B:ASP242 3.9 30.9 1.0 OE2 B:GLU238 4.0 29.3 1.0 O B:MET173 4.1 32.4 1.0 O B:HOH2096 4.2 25.2 1.0 O B:ALA198 4.4 28.9 1.0 O B:GLU238 4.4 29.9 1.0 O B:HOH2068 4.6 12.5 1.0 CZ B:ARG176 4.6 29.3 1.0 SD B:MET172 4.7 29.0 1.0 CG B:GLU238 4.8 29.3 1.0 CB B:GLU238 4.9 29.7 1.0 C B:MET173 4.9 32.2 1.0 CA B:ASP174 4.9 32.3 1.0 OD1 B:ASP174 5.0 32.5 1.0

L.Coates, G.Beaven, P.T.Erskine, S.Beale, S.P.Wood, P.M.Shoolingin-Jordan, J.B.Cooper. Structure of Chlorobium Vibrioforme 5- Aminolaevulinic Acid Dehydratase Complexed with A Diacid Inhibitor. Acta Crystallogr.,Sect.D V. 61 1594 2005.
ISSN: ISSN 0907-4449
PubMed: 16304458
DOI: 10.1107/S0907444905030350