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Magnesium in PDB 2ce7: Edta Treated

Protein crystallography data

The structure of Edta Treated, PDB code: 2ce7 was solved by C.Bieniossek, U.Baumann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.44
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 165.092, 165.092, 235.322, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 26.9

Other elements in 2ce7:

The structure of Edta Treated also contains other interesting chemical elements:

Zinc (Zn) 6 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Edta Treated (pdb code 2ce7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Edta Treated, PDB code: 2ce7:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 2ce7

Go back to Magnesium Binding Sites List in 2ce7
Magnesium binding site 1 out of 6 in the Edta Treated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Edta Treated within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1605

b:33.4
occ:1.00
O A:HOH2046 2.0 21.9 1.0
O2B A:ADP1604 2.2 20.8 1.0
PB A:ADP1604 3.5 19.1 1.0
O3B A:ADP1604 3.7 19.1 1.0
O2A A:ADP1604 3.8 22.6 1.0
O A:HOH2006 3.8 31.3 1.0
OD1 A:ASP260 4.3 36.1 1.0
N A:GLY204 4.4 27.2 1.0
O3A A:ADP1604 4.4 21.2 1.0
NZ A:LYS207 4.4 28.3 1.0
O1B A:ADP1604 4.6 21.0 1.0
CA A:PRO203 4.6 28.2 1.0
CB A:PRO203 4.7 27.0 1.0
OD2 A:ASP260 4.7 36.0 1.0
PA A:ADP1604 4.7 17.3 1.0
OG1 A:THR208 4.8 24.0 1.0
CG A:ASP260 5.0 35.2 1.0

Magnesium binding site 2 out of 6 in 2ce7

Go back to Magnesium Binding Sites List in 2ce7
Magnesium binding site 2 out of 6 in the Edta Treated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Edta Treated within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1608

b:34.4
occ:1.00
O B:HOH2033 2.1 31.1 1.0
O2B B:ADP1607 2.2 14.9 1.0
PB B:ADP1607 3.3 10.7 1.0
O B:HOH2004 3.3 14.4 1.0
O3B B:ADP1607 3.5 8.9 1.0
NZ B:LYS207 3.9 30.2 1.0
O2A B:ADP1607 4.2 24.5 1.0
OD1 B:ASP260 4.2 36.6 1.0
OD2 B:ASP260 4.3 41.2 1.0
O1B B:ADP1607 4.4 14.8 1.0
N B:GLY204 4.4 27.7 1.0
O3A B:ADP1607 4.4 16.6 1.0
CA B:PRO203 4.5 27.9 1.0
CB B:PRO203 4.7 26.9 1.0
CG B:ASP260 4.7 33.5 1.0
OG1 B:THR208 4.7 25.5 1.0
C B:PRO203 5.0 27.2 1.0

Magnesium binding site 3 out of 6 in 2ce7

Go back to Magnesium Binding Sites List in 2ce7
Magnesium binding site 3 out of 6 in the Edta Treated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Edta Treated within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1609

b:50.4
occ:1.00
O2B C:ADP1608 2.2 48.7 1.0
CB C:PRO203 3.5 27.6 1.0
PB C:ADP1608 3.5 47.2 1.0
CA C:PRO203 3.6 28.7 1.0
N C:GLY204 3.9 27.8 1.0
O3B C:ADP1608 3.9 46.6 1.0
NZ C:LYS207 4.0 31.6 1.0
C C:PRO203 4.2 28.2 1.0
O1B C:ADP1608 4.3 51.9 1.0
O2A C:ADP1608 4.4 52.0 1.0
O3A C:ADP1608 4.6 49.4 1.0
CE C:LYS207 4.7 29.6 1.0
N C:PRO203 4.8 28.1 1.0
CG C:PRO203 4.9 28.1 1.0

Magnesium binding site 4 out of 6 in 2ce7

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Magnesium binding site 4 out of 6 in the Edta Treated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Edta Treated within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1609

b:34.0
occ:1.00
O D:HOH2031 1.6 32.3 1.0
O2B D:ADP1608 2.2 15.8 1.0
O2A D:ADP1608 2.2 21.9 1.0
O D:HOH2032 2.3 20.5 1.0
O D:HOH2033 2.9 31.4 1.0
PB D:ADP1608 3.0 12.6 1.0
O3B D:ADP1608 3.2 9.0 1.0
PA D:ADP1608 3.2 12.6 1.0
O3A D:ADP1608 3.3 14.0 1.0
O D:HOH2008 3.5 23.6 1.0
O5' D:ADP1608 3.6 14.0 1.0
O D:HOH2007 3.7 19.8 1.0
OG1 D:THR208 3.9 25.4 1.0
O1B D:ADP1608 4.4 6.9 1.0
N D:GLY204 4.5 27.6 1.0
O1A D:ADP1608 4.6 15.6 1.0
CB D:THR208 4.8 30.2 1.0
CA D:GLY204 4.8 27.0 1.0
C5' D:ADP1608 4.8 17.8 1.0

Magnesium binding site 5 out of 6 in 2ce7

Go back to Magnesium Binding Sites List in 2ce7
Magnesium binding site 5 out of 6 in the Edta Treated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Edta Treated within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg1605

b:35.1
occ:1.00
O2B E:ADP1604 2.2 27.4 1.0
O2A E:ADP1604 2.2 28.7 1.0
O E:HOH2037 2.3 24.1 1.0
O E:HOH2038 2.3 26.1 1.0
O E:HOH2036 2.4 27.1 1.0
PB E:ADP1604 3.1 24.0 1.0
O3B E:ADP1604 3.3 22.1 1.0
PA E:ADP1604 3.3 20.0 1.0
O3A E:ADP1604 3.4 22.6 1.0
O5' E:ADP1604 3.8 21.9 1.0
OG1 E:THR208 4.1 27.9 1.0
N E:GLY204 4.4 27.4 1.0
O1B E:ADP1604 4.5 20.8 1.0
O1A E:ADP1604 4.7 20.3 1.0
OD1 E:ASP260 4.7 33.5 1.0
CA E:GLY204 4.8 27.9 1.0
OD2 E:ASP260 4.9 31.8 1.0
CB E:THR208 5.0 28.4 1.0

Magnesium binding site 6 out of 6 in 2ce7

Go back to Magnesium Binding Sites List in 2ce7
Magnesium binding site 6 out of 6 in the Edta Treated


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Edta Treated within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg1608

b:44.2
occ:1.00
O2B F:ADP1607 2.2 53.2 1.0
O2A F:ADP1607 2.8 60.1 1.0
O3B F:ADP1607 3.0 54.6 1.0
PB F:ADP1607 3.0 56.1 1.0
O3A F:ADP1607 3.7 58.1 1.0
O F:HOH2001 3.8 31.7 1.0
PA F:ADP1607 3.8 63.6 1.0
N F:GLY204 4.3 27.8 1.0
OG1 F:THR208 4.3 27.4 1.0
OD1 F:ASP260 4.4 29.7 1.0
O1B F:ADP1607 4.4 49.2 1.0
O1A F:ADP1607 4.6 63.6 1.0
CA F:PRO203 4.9 28.4 1.0
OD2 F:ASP260 4.9 31.9 1.0

Reference:

C.Bieniossek, T.Schalch, M.Bumann, M.Meister, R.Meier, U.Baumann. The Molecular Architecture of the Metalloprotease Ftsh. Proc.Natl.Acad.Sci.Usa V. 103 3066 2006.
ISSN: ISSN 0027-8424
PubMed: 16484367
DOI: 10.1073/PNAS.0600031103
Page generated: Mon Dec 14 07:19:00 2020

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