Atomistry » Magnesium » PDB 2vu9-2wb1 » 2w4k
Atomistry »
  Magnesium »
    PDB 2vu9-2wb1 »
      2w4k »

Magnesium in PDB 2w4k: X-Ray Structure of A Dap-Kinase 2-302

Enzymatic activity of X-Ray Structure of A Dap-Kinase 2-302

All present enzymatic activity of X-Ray Structure of A Dap-Kinase 2-302:
2.7.11.1;

Protein crystallography data

The structure of X-Ray Structure of A Dap-Kinase 2-302, PDB code: 2w4k was solved by I.De Diego, J.Kuper, F.Lehmann, M.Wilmanns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.87 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 49.310, 76.970, 108.936, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 22.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of A Dap-Kinase 2-302 (pdb code 2w4k). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of A Dap-Kinase 2-302, PDB code: 2w4k:

Magnesium binding site 1 out of 1 in 2w4k

Go back to Magnesium Binding Sites List in 2w4k
Magnesium binding site 1 out of 1 in the X-Ray Structure of A Dap-Kinase 2-302


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of A Dap-Kinase 2-302 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1304

b:23.6
occ:1.00
O A:HOH2270 1.9 14.2 1.0
O A:HOH2271 1.9 44.9 1.0
O3B A:ADP1303 2.0 36.7 1.0
OD2 A:ASP161 2.2 18.5 1.0
O1A A:ADP1303 2.3 26.8 1.0
O A:HOH2157 2.4 29.4 1.0
CG A:ASP161 3.1 17.6 1.0
PB A:ADP1303 3.3 37.2 1.0
PA A:ADP1303 3.5 26.2 1.0
O3A A:ADP1303 3.6 31.8 1.0
OD1 A:ASP161 3.8 17.7 1.0
O2B A:ADP1303 3.9 37.2 1.0
OD1 A:ASN144 4.0 16.9 1.0
OE2 A:GLU143 4.1 34.2 1.0
CB A:ASP161 4.1 16.0 1.0
O A:HOH2267 4.4 44.3 1.0
O3' A:ADP1303 4.4 29.9 1.0
C5' A:ADP1303 4.4 25.5 1.0
O5' A:ADP1303 4.5 24.5 1.0
OD2 A:ASP139 4.5 19.0 1.0
O1B A:ADP1303 4.6 36.6 1.0
O2A A:ADP1303 4.6 25.1 1.0
O A:HOH2143 4.6 26.6 1.0
ND2 A:ASN144 4.8 13.1 1.0
CG A:ASN144 4.8 16.9 1.0
C3' A:ADP1303 4.9 28.2 1.0

Reference:

K.Temmerman, I.De Diego, V.Pogenberg, B.Simon, W.Jonko, X.Li, M.Wilmanns. A Pef/Y Substrate Recognition and Signature Motif Plays A Critical Role in Dapk-Related Kinase Activity. Chem.Biol. V. 21 264 2014.
ISSN: ISSN 1074-5521
PubMed: 24440081
DOI: 10.1016/J.CHEMBIOL.2013.12.008
Page generated: Wed Aug 14 05:58:18 2024

Last articles

Ca in 5V5X
Ca in 5VH2
Ca in 5VLK
Ca in 5VLH
Ca in 5VLA
Ca in 5VKW
Ca in 5VF4
Ca in 5VJF
Ca in 5VGC
Ca in 5VGT
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy