Atomistry » Magnesium » PDB 3brw-3c5h » 3btx
Atomistry »
  Magnesium »
    PDB 3brw-3c5h »
      3btx »

Magnesium in PDB 3btx: X-Ray Structure of Human ABH2 Bound to Dsdna Through Active Site Cross-Linking

Protein crystallography data

The structure of X-Ray Structure of Human ABH2 Bound to Dsdna Through Active Site Cross-Linking, PDB code: 3btx was solved by C.-G.Yang, C.Yi, C.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.140, 78.140, 229.590, 90.00, 90.00, 120.00
R / Rfree (%) 21.9 / 22.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Human ABH2 Bound to Dsdna Through Active Site Cross-Linking (pdb code 3btx). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of Human ABH2 Bound to Dsdna Through Active Site Cross-Linking, PDB code: 3btx:

Magnesium binding site 1 out of 1 in 3btx

Go back to Magnesium Binding Sites List in 3btx
Magnesium binding site 1 out of 1 in the X-Ray Structure of Human ABH2 Bound to Dsdna Through Active Site Cross-Linking


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Human ABH2 Bound to Dsdna Through Active Site Cross-Linking within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:53.0
occ:1.00
NE2 A:HIS236 2.2 45.8 1.0
NE2 A:HIS171 2.3 44.4 1.0
O A:HOH518 2.4 43.2 1.0
O A:HOH519 2.4 62.2 1.0
OD1 A:ASP173 2.6 53.7 1.0
OD2 A:ASP173 2.7 54.2 1.0
CG A:ASP173 2.9 52.2 1.0
CE1 A:HIS236 3.1 44.8 1.0
CD2 A:HIS171 3.2 43.6 1.0
CE1 A:HIS171 3.3 45.0 1.0
CD2 A:HIS236 3.3 44.5 1.0
NH2 A:ARG254 4.1 47.6 1.0
ND1 A:HIS236 4.2 44.3 1.0
ND1 A:HIS171 4.3 44.1 1.0
CG A:HIS171 4.3 43.9 1.0
CG A:HIS236 4.4 42.9 1.0
CB A:ASP173 4.4 50.9 1.0
N A:ASP173 4.8 49.6 1.0
O A:HOH431 4.9 37.0 1.0
CA A:ASP173 5.0 50.7 1.0

Reference:

C.G.Yang, C.Yi, E.M.Duguid, C.T.Sullivan, X.Jian, P.A.Rice, C.He. Crystal Structures of Dna/Rna Repair Enzymes Alkb and ABH2 Bound to Dsdna. Nature V. 452 961 2008.
ISSN: ISSN 0028-0836
PubMed: 18432238
DOI: 10.1038/NATURE06889
Page generated: Mon Dec 14 07:56:24 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy