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Magnesium in PDB 3zwd: The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate.

Enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate.

All present enzymatic activity of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate.:
3.1.3.70;

Protein crystallography data

The structure of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate., PDB code: 3zwd was solved by S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.769 / 1.92
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 39.868, 70.239, 91.783, 90.00, 95.68, 90.00
R / Rfree (%) 16.1 / 21.45

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate. (pdb code 3zwd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate., PDB code: 3zwd:

Magnesium binding site 1 out of 1 in 3zwd

Go back to Magnesium Binding Sites List in 3zwd
Magnesium binding site 1 out of 1 in the The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The 3-Dimensional Structure of Mpgp From Thermus Thermophilus HB27, in Complex with the Alpha-Mannosylglycerate. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg260

b:27.6
occ:1.00
 O B:ASP8 2.7 25.8 1.0
O B:GLY165 2.7 28.6 1.0
OG B:SER203 2.7 30.4 1.0
O B:HOH2010 2.8 34.7 1.0
OD1 B:ASP202 2.9 39.4 1.0
OD2 B:ASP6 3.0 24.8 1.0
OD2 B:ASP202 3.1 38.8 1.0
CG B:ASP202 3.3 38.5 1.0
O B:HOH2007 3.6 26.0 1.0
C B:ASP8 3.6 27.4 1.0
CB B:SER203 3.7 24.3 1.0
CG B:ASP6 3.8 30.8 1.0
C B:GLY165 3.9 30.3 1.0
CB B:ASP8 4.1 35.6 1.0
OD1 B:ASP6 4.2 23.1 1.0
OD2 B:ASP206 4.3 25.7 1.0
C23 B:2M8262 4.3 27.8 1.0
CA B:ASP8 4.4 28.8 1.0
N B:GLY9 4.5 30.9 1.0
N B:SER203 4.6 27.1 1.0
O B:HOH2008 4.6 24.7 1.0
CA B:GLY9 4.6 33.1 1.0
OD1 B:ASN205 4.7 25.1 1.0
CA B:GLY166 4.7 26.2 1.0
N B:GLY166 4.7 24.0 1.0
CA B:GLY165 4.7 22.2 1.0
O13 B:2M8262 4.8 35.7 1.0
CA B:SER203 4.8 30.2 1.0
CB B:ASP202 4.8 28.7 1.0
CB B:ASP6 4.8 21.2 1.0
N B:ASP8 4.9 22.9 1.0
O B:HOH2167 5.0 49.0 1.0
OG1 B:THR10 5.0 37.0 1.0

Reference:

S.Goncalves, A.M.Esteves, H.Santos, N.Borges, P.M.Matias. The Three-Dimensional Structure of Mannosyl-3- Phosphoglycerate Phosphatase From Thermus Thermophilus HB27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry V. 50 9551 2011.
ISSN: ISSN 0006-2960
PubMed: 21961705
DOI: 10.1021/BI201171H
Page generated: Thu Aug 15 14:07:04 2024

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