Magnesium in PDB 6jfo: Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

Enzymatic activity of Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus

All present enzymatic activity of Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus:
3.5.1.88;

Protein crystallography data

The structure of Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfo was solved by I.H.Lee, T.H.Ho, L.W.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.99 / 1.60
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 94.733, 120.831, 47.393, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 21.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus (pdb code 6jfo). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus, PDB code: 6jfo:

Magnesium binding site 1 out of 1 in 6jfo

Go back to Magnesium Binding Sites List in 6jfo
Magnesium binding site 1 out of 1 in the Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg201

b:36.8
occ:1.00
 SG A:CSD111 2.1 33.5 1.0
NE2 A:HIS154 2.2 29.9 1.0
NE2 A:HIS158 2.3 30.9 1.0
O B:HOH101 2.3 40.0 1.0
OD2 A:CSD111 2.9 36.5 1.0
OD1 A:CSD111 3.0 40.1 1.0
CE1 A:HIS158 3.1 32.4 1.0
CD2 A:HIS154 3.1 31.2 1.0
CE1 A:HIS154 3.2 30.2 1.0
CB A:CSD111 3.3 31.4 1.0
NE2 A:GLN65 3.4 29.6 1.0
CD2 A:HIS158 3.4 31.6 1.0
O A:HOH352 3.4 33.0 1.0
O1 B:FME1 3.5 36.1 1.0
CN B:FME1 3.5 49.0 1.0
CA A:CSD111 3.8 28.5 1.0
N B:FME1 3.8 42.0 1.0
CD A:GLN65 4.1 31.3 1.0
CA B:FME1 4.1 37.0 1.0
OE1 A:GLN65 4.3 30.6 1.0
ND1 A:HIS158 4.3 32.2 1.0
ND1 A:HIS154 4.3 31.9 1.0
CG A:HIS154 4.3 29.7 1.0
CG A:HIS158 4.5 30.3 1.0
O A:GLY110 4.6 32.0 1.0
N A:LEU112 4.6 34.2 1.0
O A:HOH396 4.6 31.2 1.0
C A:CSD111 4.7 31.1 1.0
OE2 A:GLU155 4.7 38.5 1.0
CB B:FME1 4.9 34.4 1.0
N A:CSD111 4.9 30.0 1.0

Reference:

I.H.Lee, T.H.Ho, L.W.Kang. Formyl-Met-Ala-Ser Bound Crystal Structure of Class II Peptide Deformylase From Methicillin Resistant Staphylococcus Aureus To Be Published.
Page generated: Mon Dec 14 23:01:00 2020

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