Magnesium in PDB 6jie: Yaeo Bound to Magnesium From Vibrio Cholerae O395

The structure of Yaeo Bound to Magnesium From Vibrio Cholerae O395, PDB code: 6jie was solved by K.Pal, M.Yadav, U.Sen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.48 / 1.75
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	28.936, 34.356, 42.371, 90.07, 104.48, 105.49
R / Rfree (%)	16.6 / 20.9

The binding sites of Magnesium atom in the Yaeo Bound to Magnesium From Vibrio Cholerae O395 (pdb code 6jie). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Yaeo Bound to Magnesium From Vibrio Cholerae O395, PDB code: 6jie:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Yaeo Bound to Magnesium From Vibrio Cholerae O395


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Yaeo Bound to Magnesium From Vibrio Cholerae O395 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg201 b:32.7 occ:1.00 O B:HOH384 2.1 29.2 1.0 OD1 B:ASP61 2.2 48.3 1.0 O B:HOH323 2.3 24.6 1.0 CG B:ASP61 3.2 41.4 1.0 CB B:ASP61 3.4 19.8 1.0 O B:HOH329 4.1 15.6 1.0 O B:HOH395 4.2 38.3 1.0 OD2 B:ASP61 4.3 34.5 1.0 O B:HOH342 4.5 24.2 1.0 OE1 B:GLU59 4.5 27.4 1.0 O B:HOH341 4.6 28.9 1.0 CA B:ASP61 4.9 17.4 1.0

Magnesium binding site 2 out of 4 in the Yaeo Bound to Magnesium From Vibrio Cholerae O395


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Yaeo Bound to Magnesium From Vibrio Cholerae O395 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg202 b:43.4 occ:1.00 OE2 B:GLU52 2.1 48.1 1.0 O B:HOH364 2.2 40.4 1.0 O B:HOH326 2.2 49.2 1.0 CD B:GLU52 3.1 40.3 1.0 OE1 B:GLU52 3.4 44.6 1.0 O A:PHE16 4.0 14.9 1.0 O A:HOH462 4.5 29.7 1.0 CG B:GLU52 4.5 28.8 1.0

Magnesium binding site 3 out of 4 in the Yaeo Bound to Magnesium From Vibrio Cholerae O395


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Yaeo Bound to Magnesium From Vibrio Cholerae O395 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:30.3 occ:1.00 OD2 A:ASP61 2.1 45.4 1.0 O A:HOH442 2.2 19.6 1.0 O A:HOH494 2.2 31.6 1.0 CG A:ASP61 3.2 39.4 1.0 CB A:ASP61 3.5 19.0 1.0 O A:HOH410 3.5 40.9 1.0 O A:HOH457 4.0 16.5 1.0 O A:HOH416 4.1 34.8 1.0 OE2 A:GLU59 4.3 24.7 1.0 OD1 A:ASP61 4.3 35.2 1.0 O A:HOH461 4.3 18.5 1.0 O A:HOH407 4.8 33.5 1.0 CG A:GLN44 4.9 18.5 1.0 CA A:ASP61 5.0 16.9 1.0

Magnesium binding site 4 out of 4 in the Yaeo Bound to Magnesium From Vibrio Cholerae O395


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Yaeo Bound to Magnesium From Vibrio Cholerae O395 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:30.8 occ:1.00 O A:HOH456 2.1 32.3 1.0 OE1 A:GLU52 2.1 39.4 1.0 CD A:GLU52 3.0 36.8 1.0 OE2 A:GLU52 3.2 42.2 1.0 CG A:GLU52 4.4 27.6 1.0 O A:HOH448 4.8 40.2 1.0

K.Pal, M.Yadav, S.Jain, B.Ghosh, R.Sen, U.Sen. Vibrio Cholerae Yaeo Is A Structural Homologue of Rna Chaperone Hfq That Inhibits Rho-Dependent Transcription Termination By Dissociating Its Hexameric State. J.Mol.Biol. V. 431 4749 2019.
ISSN: ESSN 1089-8638
PubMed: 31628950
DOI: 10.1016/J.JMB.2019.09.019