Magnesium in PDB 6vau: Bare Actin Filament From A Partially Cofilin-Decorated Sample
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Bare Actin Filament From A Partially Cofilin-Decorated Sample
(pdb code 6vau). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the
Bare Actin Filament From A Partially Cofilin-Decorated Sample, PDB code: 6vau:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
Magnesium binding site 1 out
of 5 in 6vau
Go back to
Magnesium Binding Sites List in 6vau
Magnesium binding site 1 out
of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg801
b:41.7
occ:1.00
|
O3B
|
B:ADP802
|
2.1
|
38.0
|
1.0
|
O2B
|
B:ADP802
|
2.3
|
38.0
|
1.0
|
PB
|
B:ADP802
|
2.6
|
38.0
|
1.0
|
OE1
|
B:GLN137
|
3.0
|
42.2
|
1.0
|
O3A
|
B:ADP802
|
3.4
|
38.0
|
1.0
|
CD
|
B:GLN137
|
3.7
|
42.2
|
1.0
|
O1B
|
B:ADP802
|
4.0
|
38.0
|
1.0
|
OD1
|
B:ASP154
|
4.0
|
36.6
|
1.0
|
NE2
|
B:GLN137
|
4.1
|
42.2
|
1.0
|
CA
|
B:GLY156
|
4.1
|
33.7
|
1.0
|
N
|
B:GLY156
|
4.6
|
33.7
|
1.0
|
OD2
|
B:ASP154
|
4.6
|
36.6
|
1.0
|
O2A
|
B:ADP802
|
4.6
|
38.0
|
1.0
|
PA
|
B:ADP802
|
4.7
|
38.0
|
1.0
|
OD2
|
B:ASP11
|
4.7
|
48.3
|
1.0
|
CG
|
B:ASP154
|
4.8
|
36.6
|
1.0
|
CG
|
B:GLN137
|
4.8
|
42.2
|
1.0
|
CG2
|
B:VAL339
|
4.8
|
43.2
|
1.0
|
CB
|
B:GLN137
|
4.9
|
42.2
|
1.0
|
OD1
|
B:ASP11
|
5.0
|
48.3
|
1.0
|
CA
|
B:GLY13
|
5.0
|
42.8
|
1.0
|
NZ
|
B:LYS18
|
5.0
|
43.9
|
1.0
|
|
Magnesium binding site 2 out
of 5 in 6vau
Go back to
Magnesium Binding Sites List in 6vau
Magnesium binding site 2 out
of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg801
b:41.7
occ:1.00
|
O3B
|
A:ADP802
|
2.1
|
38.0
|
1.0
|
O2B
|
A:ADP802
|
2.3
|
38.0
|
1.0
|
PB
|
A:ADP802
|
2.6
|
38.0
|
1.0
|
OE1
|
A:GLN137
|
3.0
|
42.2
|
1.0
|
O3A
|
A:ADP802
|
3.4
|
38.0
|
1.0
|
CD
|
A:GLN137
|
3.7
|
42.2
|
1.0
|
O1B
|
A:ADP802
|
4.0
|
38.0
|
1.0
|
OD1
|
A:ASP154
|
4.0
|
36.6
|
1.0
|
NE2
|
A:GLN137
|
4.1
|
42.2
|
1.0
|
CA
|
A:GLY156
|
4.1
|
33.7
|
1.0
|
N
|
A:GLY156
|
4.6
|
33.7
|
1.0
|
OD2
|
A:ASP154
|
4.6
|
36.6
|
1.0
|
O2A
|
A:ADP802
|
4.6
|
38.0
|
1.0
|
PA
|
A:ADP802
|
4.7
|
38.0
|
1.0
|
OD2
|
A:ASP11
|
4.7
|
48.3
|
1.0
|
CG
|
A:ASP154
|
4.8
|
36.6
|
1.0
|
CG
|
A:GLN137
|
4.8
|
42.2
|
1.0
|
CG2
|
A:VAL339
|
4.8
|
43.2
|
1.0
|
CB
|
A:GLN137
|
4.9
|
42.2
|
1.0
|
OD1
|
A:ASP11
|
5.0
|
48.3
|
1.0
|
CA
|
A:GLY13
|
5.0
|
42.8
|
1.0
|
NZ
|
A:LYS18
|
5.0
|
43.9
|
1.0
|
|
Magnesium binding site 3 out
of 5 in 6vau
Go back to
Magnesium Binding Sites List in 6vau
Magnesium binding site 3 out
of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg801
b:41.7
occ:1.00
|
O3B
|
C:ADP802
|
2.1
|
38.0
|
1.0
|
O2B
|
C:ADP802
|
2.3
|
38.0
|
1.0
|
PB
|
C:ADP802
|
2.6
|
38.0
|
1.0
|
OE1
|
C:GLN137
|
3.0
|
42.2
|
1.0
|
O3A
|
C:ADP802
|
3.4
|
38.0
|
1.0
|
CD
|
C:GLN137
|
3.7
|
42.2
|
1.0
|
O1B
|
C:ADP802
|
4.0
|
38.0
|
1.0
|
OD1
|
C:ASP154
|
4.0
|
36.6
|
1.0
|
NE2
|
C:GLN137
|
4.1
|
42.2
|
1.0
|
CA
|
C:GLY156
|
4.1
|
33.7
|
1.0
|
N
|
C:GLY156
|
4.6
|
33.7
|
1.0
|
OD2
|
C:ASP154
|
4.6
|
36.6
|
1.0
|
O2A
|
C:ADP802
|
4.6
|
38.0
|
1.0
|
PA
|
C:ADP802
|
4.7
|
38.0
|
1.0
|
OD2
|
C:ASP11
|
4.7
|
48.3
|
1.0
|
CG
|
C:ASP154
|
4.8
|
36.6
|
1.0
|
CG
|
C:GLN137
|
4.8
|
42.2
|
1.0
|
CG2
|
C:VAL339
|
4.8
|
43.2
|
1.0
|
CB
|
C:GLN137
|
4.9
|
42.2
|
1.0
|
OD1
|
C:ASP11
|
5.0
|
48.3
|
1.0
|
CA
|
C:GLY13
|
5.0
|
42.8
|
1.0
|
NZ
|
C:LYS18
|
5.0
|
43.9
|
1.0
|
|
Magnesium binding site 4 out
of 5 in 6vau
Go back to
Magnesium Binding Sites List in 6vau
Magnesium binding site 4 out
of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg801
b:41.7
occ:1.00
|
O3B
|
D:ADP802
|
2.1
|
38.0
|
1.0
|
O2B
|
D:ADP802
|
2.3
|
38.0
|
1.0
|
PB
|
D:ADP802
|
2.6
|
38.0
|
1.0
|
OE1
|
D:GLN137
|
3.0
|
42.2
|
1.0
|
O3A
|
D:ADP802
|
3.4
|
38.0
|
1.0
|
CD
|
D:GLN137
|
3.7
|
42.2
|
1.0
|
O1B
|
D:ADP802
|
4.0
|
38.0
|
1.0
|
OD1
|
D:ASP154
|
4.0
|
36.6
|
1.0
|
NE2
|
D:GLN137
|
4.1
|
42.2
|
1.0
|
CA
|
D:GLY156
|
4.1
|
33.7
|
1.0
|
N
|
D:GLY156
|
4.6
|
33.7
|
1.0
|
OD2
|
D:ASP154
|
4.6
|
36.6
|
1.0
|
O2A
|
D:ADP802
|
4.6
|
38.0
|
1.0
|
PA
|
D:ADP802
|
4.7
|
38.0
|
1.0
|
OD2
|
D:ASP11
|
4.7
|
48.3
|
1.0
|
CG
|
D:ASP154
|
4.8
|
36.6
|
1.0
|
CG
|
D:GLN137
|
4.8
|
42.2
|
1.0
|
CG2
|
D:VAL339
|
4.8
|
43.2
|
1.0
|
CB
|
D:GLN137
|
4.9
|
42.2
|
1.0
|
OD1
|
D:ASP11
|
5.0
|
48.3
|
1.0
|
CA
|
D:GLY13
|
5.0
|
42.8
|
1.0
|
NZ
|
D:LYS18
|
5.0
|
43.9
|
1.0
|
|
Magnesium binding site 5 out
of 5 in 6vau
Go back to
Magnesium Binding Sites List in 6vau
Magnesium binding site 5 out
of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg801
b:41.7
occ:1.00
|
O3B
|
E:ADP802
|
2.1
|
38.0
|
1.0
|
O2B
|
E:ADP802
|
2.3
|
38.0
|
1.0
|
PB
|
E:ADP802
|
2.6
|
38.0
|
1.0
|
OE1
|
E:GLN137
|
3.0
|
42.2
|
1.0
|
O3A
|
E:ADP802
|
3.4
|
38.0
|
1.0
|
CD
|
E:GLN137
|
3.7
|
42.2
|
1.0
|
O1B
|
E:ADP802
|
4.0
|
38.0
|
1.0
|
OD1
|
E:ASP154
|
4.0
|
36.6
|
1.0
|
NE2
|
E:GLN137
|
4.1
|
42.2
|
1.0
|
CA
|
E:GLY156
|
4.1
|
33.7
|
1.0
|
N
|
E:GLY156
|
4.6
|
33.7
|
1.0
|
OD2
|
E:ASP154
|
4.6
|
36.6
|
1.0
|
O2A
|
E:ADP802
|
4.6
|
38.0
|
1.0
|
PA
|
E:ADP802
|
4.7
|
38.0
|
1.0
|
OD2
|
E:ASP11
|
4.7
|
48.3
|
1.0
|
CG
|
E:ASP154
|
4.8
|
36.6
|
1.0
|
CG
|
E:GLN137
|
4.8
|
42.2
|
1.0
|
CG2
|
E:VAL339
|
4.8
|
43.2
|
1.0
|
CB
|
E:GLN137
|
4.9
|
42.2
|
1.0
|
OD1
|
E:ASP11
|
5.0
|
48.3
|
1.0
|
CA
|
E:GLY13
|
5.0
|
42.8
|
1.0
|
NZ
|
E:LYS18
|
5.0
|
43.9
|
1.0
|
|
Reference:
A.R.Huehn,
J.P.Bibeau,
A.C.Schramm,
W.Cao,
E.M.De La Cruz,
C.V.Sindelar.
Structures of Cofilin-Induced Structural Changes Reveal Local and Asymmetric Perturbations of Actin Filaments Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1915987117
Page generated: Tue Oct 1 21:27:07 2024
|