Magnesium in PDB 6vau: Bare Actin Filament From A Partially Cofilin-Decorated Sample

The binding sites of Magnesium atom in the Bare Actin Filament From A Partially Cofilin-Decorated Sample (pdb code 6vau). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Bare Actin Filament From A Partially Cofilin-Decorated Sample, PDB code: 6vau:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:41.7 occ:1.00 O3B B:ADP802 2.1 38.0 1.0 O2B B:ADP802 2.3 38.0 1.0 PB B:ADP802 2.6 38.0 1.0 OE1 B:GLN137 3.0 42.2 1.0 O3A B:ADP802 3.4 38.0 1.0 CD B:GLN137 3.7 42.2 1.0 O1B B:ADP802 4.0 38.0 1.0 OD1 B:ASP154 4.0 36.6 1.0 NE2 B:GLN137 4.1 42.2 1.0 CA B:GLY156 4.1 33.7 1.0 N B:GLY156 4.6 33.7 1.0 OD2 B:ASP154 4.6 36.6 1.0 O2A B:ADP802 4.6 38.0 1.0 PA B:ADP802 4.7 38.0 1.0 OD2 B:ASP11 4.7 48.3 1.0 CG B:ASP154 4.8 36.6 1.0 CG B:GLN137 4.8 42.2 1.0 CG2 B:VAL339 4.8 43.2 1.0 CB B:GLN137 4.9 42.2 1.0 OD1 B:ASP11 5.0 48.3 1.0 CA B:GLY13 5.0 42.8 1.0 NZ B:LYS18 5.0 43.9 1.0

Magnesium binding site 2 out of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:41.7 occ:1.00 O3B A:ADP802 2.1 38.0 1.0 O2B A:ADP802 2.3 38.0 1.0 PB A:ADP802 2.6 38.0 1.0 OE1 A:GLN137 3.0 42.2 1.0 O3A A:ADP802 3.4 38.0 1.0 CD A:GLN137 3.7 42.2 1.0 O1B A:ADP802 4.0 38.0 1.0 OD1 A:ASP154 4.0 36.6 1.0 NE2 A:GLN137 4.1 42.2 1.0 CA A:GLY156 4.1 33.7 1.0 N A:GLY156 4.6 33.7 1.0 OD2 A:ASP154 4.6 36.6 1.0 O2A A:ADP802 4.6 38.0 1.0 PA A:ADP802 4.7 38.0 1.0 OD2 A:ASP11 4.7 48.3 1.0 CG A:ASP154 4.8 36.6 1.0 CG A:GLN137 4.8 42.2 1.0 CG2 A:VAL339 4.8 43.2 1.0 CB A:GLN137 4.9 42.2 1.0 OD1 A:ASP11 5.0 48.3 1.0 CA A:GLY13 5.0 42.8 1.0 NZ A:LYS18 5.0 43.9 1.0

Magnesium binding site 3 out of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg801 b:41.7 occ:1.00 O3B C:ADP802 2.1 38.0 1.0 O2B C:ADP802 2.3 38.0 1.0 PB C:ADP802 2.6 38.0 1.0 OE1 C:GLN137 3.0 42.2 1.0 O3A C:ADP802 3.4 38.0 1.0 CD C:GLN137 3.7 42.2 1.0 O1B C:ADP802 4.0 38.0 1.0 OD1 C:ASP154 4.0 36.6 1.0 NE2 C:GLN137 4.1 42.2 1.0 CA C:GLY156 4.1 33.7 1.0 N C:GLY156 4.6 33.7 1.0 OD2 C:ASP154 4.6 36.6 1.0 O2A C:ADP802 4.6 38.0 1.0 PA C:ADP802 4.7 38.0 1.0 OD2 C:ASP11 4.7 48.3 1.0 CG C:ASP154 4.8 36.6 1.0 CG C:GLN137 4.8 42.2 1.0 CG2 C:VAL339 4.8 43.2 1.0 CB C:GLN137 4.9 42.2 1.0 OD1 C:ASP11 5.0 48.3 1.0 CA C:GLY13 5.0 42.8 1.0 NZ C:LYS18 5.0 43.9 1.0

Magnesium binding site 4 out of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg801 b:41.7 occ:1.00 O3B D:ADP802 2.1 38.0 1.0 O2B D:ADP802 2.3 38.0 1.0 PB D:ADP802 2.6 38.0 1.0 OE1 D:GLN137 3.0 42.2 1.0 O3A D:ADP802 3.4 38.0 1.0 CD D:GLN137 3.7 42.2 1.0 O1B D:ADP802 4.0 38.0 1.0 OD1 D:ASP154 4.0 36.6 1.0 NE2 D:GLN137 4.1 42.2 1.0 CA D:GLY156 4.1 33.7 1.0 N D:GLY156 4.6 33.7 1.0 OD2 D:ASP154 4.6 36.6 1.0 O2A D:ADP802 4.6 38.0 1.0 PA D:ADP802 4.7 38.0 1.0 OD2 D:ASP11 4.7 48.3 1.0 CG D:ASP154 4.8 36.6 1.0 CG D:GLN137 4.8 42.2 1.0 CG2 D:VAL339 4.8 43.2 1.0 CB D:GLN137 4.9 42.2 1.0 OD1 D:ASP11 5.0 48.3 1.0 CA D:GLY13 5.0 42.8 1.0 NZ D:LYS18 5.0 43.9 1.0

Magnesium binding site 5 out of 5 in the Bare Actin Filament From A Partially Cofilin-Decorated Sample


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bare Actin Filament From A Partially Cofilin-Decorated Sample within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg801 b:41.7 occ:1.00 O3B E:ADP802 2.1 38.0 1.0 O2B E:ADP802 2.3 38.0 1.0 PB E:ADP802 2.6 38.0 1.0 OE1 E:GLN137 3.0 42.2 1.0 O3A E:ADP802 3.4 38.0 1.0 CD E:GLN137 3.7 42.2 1.0 O1B E:ADP802 4.0 38.0 1.0 OD1 E:ASP154 4.0 36.6 1.0 NE2 E:GLN137 4.1 42.2 1.0 CA E:GLY156 4.1 33.7 1.0 N E:GLY156 4.6 33.7 1.0 OD2 E:ASP154 4.6 36.6 1.0 O2A E:ADP802 4.6 38.0 1.0 PA E:ADP802 4.7 38.0 1.0 OD2 E:ASP11 4.7 48.3 1.0 CG E:ASP154 4.8 36.6 1.0 CG E:GLN137 4.8 42.2 1.0 CG2 E:VAL339 4.8 43.2 1.0 CB E:GLN137 4.9 42.2 1.0 OD1 E:ASP11 5.0 48.3 1.0 CA E:GLY13 5.0 42.8 1.0 NZ E:LYS18 5.0 43.9 1.0

A.R.Huehn, J.P.Bibeau, A.C.Schramm, W.Cao, E.M.De La Cruz, C.V.Sindelar. Structures of Cofilin-Induced Structural Changes Reveal Local and Asymmetric Perturbations of Actin Filaments Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1915987117