Magnesium in PDB 6yt3: Structure of the Mostonano Fusion Protein

Protein crystallography data

The structure of Structure of the Mostonano Fusion Protein, PDB code: 6yt3 was solved by R.M.Benoit, T.Bierig, C.Collu, S.Engilberge, V.Olieric, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.89 / 2.85
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 165.697, 165.697, 352.162, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 26.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Mostonano Fusion Protein (pdb code 6yt3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Mostonano Fusion Protein, PDB code: 6yt3:

Magnesium binding site 1 out of 1 in 6yt3

Go back to Magnesium Binding Sites List in 6yt3
Magnesium binding site 1 out of 1 in the Structure of the Mostonano Fusion Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Mostonano Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:47.5
occ:1.00
O2B A:ATP301 1.9 58.1 1.0
O A:PRO227 2.1 54.2 1.0
O2A A:ATP301 2.2 60.0 1.0
OE2 A:GLU190 2.4 73.2 1.0
CD A:GLU190 3.3 79.5 1.0
PB A:ATP301 3.3 56.0 1.0
OD2 A:ASP171 3.3 51.7 1.0
C A:PRO227 3.3 53.3 1.0
OE1 A:GLU190 3.3 78.8 1.0
PA A:ATP301 3.5 60.5 1.0
O3A A:ATP301 3.6 59.3 1.0
OD1 A:ASP171 3.8 51.2 1.0
O3B A:ATP301 3.9 51.7 1.0
NZ A:LYS45 4.0 30.7 1.0
CG A:ASP171 4.0 47.7 1.0
O3G A:ATP301 4.1 46.6 1.0
N A:VAL228 4.2 47.6 1.0
CA A:VAL228 4.3 45.9 1.0
CA A:PRO227 4.4 49.3 1.0
PG A:ATP301 4.4 47.1 1.0
O1A A:ATP301 4.5 61.3 1.0
O1B A:ATP301 4.5 51.6 1.0
O5' A:ATP301 4.5 60.2 1.0
O1G A:ATP301 4.6 49.8 1.0
O A:HOH412 4.6 37.6 1.0
CG A:GLU190 4.7 46.1 1.0
C5' A:ATP301 4.7 59.5 1.0
CB A:PRO227 4.9 50.8 1.0
CG1 A:VAL228 4.9 48.2 1.0
O A:HOH452 4.9 33.1 1.0

Reference:

G.Collu, T.Bierig, A.-S.Krebs, S.Engilberge, N.Varma, R.Guixa-Gonzalez, X.Deupi, V.Olieric, Poghosyan.E., R.M.Benoit. Chimeric Single Alpha-Helical Domains As Rigid Fusion Protein Connections For Protein Nanotechnology and Structural Biology Biorxiv 2020.
DOI: 10.1101/2020.09.29.318410
Page generated: Tue Dec 15 02:28:25 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy