Magnesium in PDB 6yt3: Structure of the Mostonano Fusion Protein

The structure of Structure of the Mostonano Fusion Protein, PDB code: 6yt3 was solved by R.M.Benoit, T.Bierig, C.Collu, S.Engilberge, V.Olieric, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.89 / 2.85
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	165.697, 165.697, 352.162, 90.00, 90.00, 120.00
R / Rfree (%)	23.3 / 26.3

The binding sites of Magnesium atom in the Structure of the Mostonano Fusion Protein (pdb code 6yt3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Mostonano Fusion Protein, PDB code: 6yt3:

Magnesium binding site 1 out of 1 in the Structure of the Mostonano Fusion Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Mostonano Fusion Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg302 b:47.5 occ:1.00 O2B A:ATP301 1.9 58.1 1.0 O A:PRO227 2.1 54.2 1.0 O2A A:ATP301 2.2 60.0 1.0 OE2 A:GLU190 2.4 73.2 1.0 CD A:GLU190 3.3 79.5 1.0 PB A:ATP301 3.3 56.0 1.0 OD2 A:ASP171 3.3 51.7 1.0 C A:PRO227 3.3 53.3 1.0 OE1 A:GLU190 3.3 78.8 1.0 PA A:ATP301 3.5 60.5 1.0 O3A A:ATP301 3.6 59.3 1.0 OD1 A:ASP171 3.8 51.2 1.0 O3B A:ATP301 3.9 51.7 1.0 NZ A:LYS45 4.0 30.7 1.0 CG A:ASP171 4.0 47.7 1.0 O3G A:ATP301 4.1 46.6 1.0 N A:VAL228 4.2 47.6 1.0 CA A:VAL228 4.3 45.9 1.0 CA A:PRO227 4.4 49.3 1.0 PG A:ATP301 4.4 47.1 1.0 O1A A:ATP301 4.5 61.3 1.0 O1B A:ATP301 4.5 51.6 1.0 O5' A:ATP301 4.5 60.2 1.0 O1G A:ATP301 4.6 49.8 1.0 O A:HOH412 4.6 37.6 1.0 CG A:GLU190 4.7 46.1 1.0 C5' A:ATP301 4.7 59.5 1.0 CB A:PRO227 4.9 50.8 1.0 CG1 A:VAL228 4.9 48.2 1.0 O A:HOH452 4.9 33.1 1.0

G.Collu, T.Bierig, A.-S.Krebs, S.Engilberge, N.Varma, R.Guixa-Gonzalez, X.Deupi, V.Olieric, Poghosyan.E., R.M.Benoit. Chimeric Single Alpha-Helical Domains As Rigid Fusion Protein Connections For Protein Nanotechnology and Structural Biology Biorxiv 2020.
DOI: 10.1101/2020.09.29.318410