Atomistry » Magnesium » PDB 6ykt-6yxr » 6yt3
Atomistry »
  Magnesium »
    PDB 6ykt-6yxr »
      6yt3 »

Magnesium in PDB 6yt3: Structure of the Mostonano Fusion Protein

Protein crystallography data

The structure of Structure of the Mostonano Fusion Protein, PDB code: 6yt3 was solved by R.M.Benoit, T.Bierig, C.Collu, S.Engilberge, V.Olieric, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.89 / 2.85
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 165.697, 165.697, 352.162, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 26.3

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Mostonano Fusion Protein (pdb code 6yt3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Mostonano Fusion Protein, PDB code: 6yt3:

Magnesium binding site 1 out of 1 in 6yt3

Go back to Magnesium Binding Sites List in 6yt3
Magnesium binding site 1 out of 1 in the Structure of the Mostonano Fusion Protein


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Mostonano Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:47.5
occ:1.00
O2B A:ATP301 1.9 58.1 1.0
O A:PRO227 2.1 54.2 1.0
O2A A:ATP301 2.2 60.0 1.0
OE2 A:GLU190 2.4 73.2 1.0
CD A:GLU190 3.3 79.5 1.0
PB A:ATP301 3.3 56.0 1.0
OD2 A:ASP171 3.3 51.7 1.0
C A:PRO227 3.3 53.3 1.0
OE1 A:GLU190 3.3 78.8 1.0
PA A:ATP301 3.5 60.5 1.0
O3A A:ATP301 3.6 59.3 1.0
OD1 A:ASP171 3.8 51.2 1.0
O3B A:ATP301 3.9 51.7 1.0
NZ A:LYS45 4.0 30.7 1.0
CG A:ASP171 4.0 47.7 1.0
O3G A:ATP301 4.1 46.6 1.0
N A:VAL228 4.2 47.6 1.0
CA A:VAL228 4.3 45.9 1.0
CA A:PRO227 4.4 49.3 1.0
PG A:ATP301 4.4 47.1 1.0
O1A A:ATP301 4.5 61.3 1.0
O1B A:ATP301 4.5 51.6 1.0
O5' A:ATP301 4.5 60.2 1.0
O1G A:ATP301 4.6 49.8 1.0
O A:HOH412 4.6 37.6 1.0
CG A:GLU190 4.7 46.1 1.0
C5' A:ATP301 4.7 59.5 1.0
CB A:PRO227 4.9 50.8 1.0
CG1 A:VAL228 4.9 48.2 1.0
O A:HOH452 4.9 33.1 1.0

Reference:

G.Collu, T.Bierig, A.-S.Krebs, S.Engilberge, N.Varma, R.Guixa-Gonzalez, X.Deupi, V.Olieric, Poghosyan.E., R.M.Benoit. Chimeric Single Alpha-Helical Domains As Rigid Fusion Protein Connections For Protein Nanotechnology and Structural Biology Biorxiv 2020.
DOI: 10.1101/2020.09.29.318410
Page generated: Wed Oct 2 01:06:08 2024

Last articles

Zn in 1MC5
Zn in 1MFM
Zn in 1MA0
Zn in 1MED
Zn in 1MEA
Zn in 1MBX
Zn in 1MA3
Zn in 1M9O
Zn in 1M9R
Zn in 1M9Q
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy