Magnesium in PDB 7bl4: In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle

The structure of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle (pdb code 7bl4). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle, PDB code: 7bl4:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:64.3 occ:1.00 OP1 A:A515 4.4 60.1 1.0

Magnesium binding site 2 out of 6 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3002 b:74.0 occ:1.00 OP1 A:A2662 3.5 86.6 1.0 O6 A:G2664 3.9 103.7 1.0 OP2 A:A2662 4.2 86.6 1.0 OP2 A:G2663 4.3 95.3 1.0 P A:A2662 4.3 86.6 1.0 N7 A:G2663 4.6 95.3 1.0 C6 A:G2664 4.9 103.7 1.0 O2' A:G2655 5.0 109.6 1.0

Magnesium binding site 3 out of 6 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3003 b:105.0 occ:1.00 O6 A:G2655 3.9 109.6 1.0 OP2 A:C2651 4.0 119.4 1.0 C6 A:G2655 4.2 109.6 1.0 OP1 A:C2651 4.2 119.4 1.0 N1 A:G2655 4.3 109.6 1.0 P A:C2651 4.7 119.4 1.0

Magnesium binding site 4 out of 6 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg201 b:80.8 occ:1.00 OE1 6:GLN57 2.4 80.1 1.0 CD 6:GLN57 3.5 80.1 1.0 CB 6:GLN57 3.7 80.1 1.0 OE2 6:GLU58 3.8 80.9 1.0 CG 6:GLN57 4.2 80.1 1.0 ND1 6:HIS54 4.4 77.0 1.0 NE2 6:GLN57 4.6 80.1 1.0 O 6:HOH302 4.7 72.4 1.0 CD 6:GLU58 4.8 80.9 1.0 CE1 6:HIS54 5.0 77.0 1.0

Magnesium binding site 5 out of 6 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg202 b:62.1 occ:1.00 OE1 6:GLU72 4.1 68.8 1.0 CD 6:GLU72 4.3 68.8 1.0 OE2 6:GLU72 4.5 68.8 1.0 O6 A:G2655 4.6 109.6 1.0 CB 6:GLU72 4.7 68.8 1.0 O 6:GLU72 4.9 68.8 1.0

Magnesium binding site 6 out of 6 in the In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of In Vitro Reconstituted 50S-Obge-Gmppnp-Rsfs Particle within 5.0Å range: probe atom residue distance (Å) B Occ 9:Mg401 b:90.8 occ:1.00 O2G 9:GNP402 2.0 94.9 1.0 O1B 9:GNP402 2.0 94.9 1.0 OG 9:SER173 2.1 86.4 1.0 PB 9:GNP402 2.4 94.9 1.0 N3B 9:GNP402 2.5 94.9 1.0 O2B 9:GNP402 2.5 94.9 1.0 PG 9:GNP402 2.7 94.9 1.0 CB 9:SER173 3.4 86.4 1.0 CG2 9:THR193 3.6 91.0 1.0 N 9:SER173 3.6 86.4 1.0 O3G 9:GNP402 3.8 94.9 1.0 O1G 9:GNP402 3.8 94.9 1.0 OG1 9:THR193 3.8 91.0 1.0 O3A 9:GNP402 4.0 94.9 1.0 CA 9:SER173 4.0 86.4 1.0 CB 9:LYS172 4.2 90.0 1.0 CB 9:THR193 4.3 91.0 1.0 CE 9:LYS172 4.5 90.0 1.0 C 9:LYS172 4.5 90.0 1.0 O1A 9:GNP402 4.7 94.9 1.0 N 9:THR193 4.8 91.0 1.0 CA 9:LYS172 4.8 90.0 1.0 OD2 9:ASP213 4.8 88.5 1.0 N 9:LYS172 4.9 90.0 1.0 O 9:ILE214 5.0 91.2 1.0 PA 9:GNP402 5.0 94.9 1.0

R.Nikolay, T.Hilal, S.Schmidt, B.Qin, D.Schwefel, C.H.Vieira-Vieira, T.Mielke, J.Burger, J.Loerke, K.Amikura, T.Flugel, T.Ueda, M.Selbach, E.Deuerling, C.M.T.Spahn. Snapshots of Native Pre-50S Ribosomes Reveal A Biogenesis Factor Network and Evolutionary Specialization. Mol.Cell V. 81 1200 2021.
ISSN: ISSN 1097-2765
PubMed: 33639093
DOI: 10.1016/J.MOLCEL.2021.02.006