Magnesium in PDB 7bl6: 50S-Obge-Gmppnp Particle

The structure of 50S-Obge-Gmppnp Particle also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Magnesium atom in the 50S-Obge-Gmppnp Particle (pdb code 7bl6). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 50S-Obge-Gmppnp Particle, PDB code: 7bl6:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the 50S-Obge-Gmppnp Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 50S-Obge-Gmppnp Particle within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg3001 b:202.1 occ:1.00 OP1 A:A515 4.4 276.1 1.0 OP2 A:C20 5.0 227.5 1.0

Magnesium binding site 2 out of 2 in the 50S-Obge-Gmppnp Particle


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 50S-Obge-Gmppnp Particle within 5.0Å range: probe atom residue distance (Å) B Occ 9:Mg401 b:424.6 occ:1.00 O2G 9:GNP402 2.1 450.7 1.0 OG 9:SER173 2.2 417.7 1.0 O1B 9:GNP402 2.3 450.7 1.0 O2B 9:GNP402 2.4 450.7 1.0 PB 9:GNP402 2.4 450.7 1.0 N3B 9:GNP402 2.6 450.7 1.0 PG 9:GNP402 2.8 450.7 1.0 CB 9:SER173 3.5 417.7 1.0 OG1 9:THR193 3.5 428.5 1.0 CG2 9:THR193 3.5 428.5 1.0 N 9:SER173 3.6 417.7 1.0 O1G 9:GNP402 3.8 450.7 1.0 CA 9:SER173 4.0 417.7 1.0 O3G 9:GNP402 4.0 450.7 1.0 O3A 9:GNP402 4.1 450.7 1.0 CB 9:THR193 4.2 428.5 1.0 CB 9:LYS172 4.2 423.3 1.0 CE 9:LYS172 4.4 423.3 1.0 C 9:LYS172 4.5 423.3 1.0 N 9:THR193 4.6 428.5 1.0 O 9:ILE214 4.7 412.4 1.0 CA 9:LYS172 4.8 423.3 1.0 N 9:LYS172 4.9 423.3 1.0 OD2 9:ASP213 5.0 403.3 1.0 O1A 9:GNP402 5.0 450.7 1.0 CA 9:PRO215 5.0 424.8 1.0

R.Nikolay, T.Hilal, S.Schmidt, B.Qin, D.Schwefel, C.H.Vieira-Vieira, T.Mielke, J.Burger, J.Loerke, K.Amikura, T.Flugel, T.Ueda, M.Selbach, E.Deuerling, C.M.T.Spahn. Snapshots of Native Pre-50S Ribosomes Reveal A Biogenesis Factor Network and Evolutionary Specialization. Mol.Cell V. 81 1200 2021.
ISSN: ISSN 1097-2765
PubMed: 33639093
DOI: 10.1016/J.MOLCEL.2021.02.006