Magnesium in PDB 8ec1: 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Comlpex with Ligand Orientation I

The structure of 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Comlpex with Ligand Orientation I, PDB code: 8ec1 was solved by E.N.Ogbonna, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.19 / 1.63
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.792, 40.069, 65.554, 90, 90, 90
R / Rfree (%)	18.4 / 22.7

The binding sites of Magnesium atom in the 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Comlpex with Ligand Orientation I (pdb code 8ec1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Comlpex with Ligand Orientation I, PDB code: 8ec1:

Magnesium binding site 1 out of 1 in the 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Comlpex with Ligand Orientation I


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 5'-Cgcgaattcgcg-3' and Benzimidazole Diamidine (DB1476) Comlpex with Ligand Orientation I within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:21.8 occ:1.00 O C:HOH112 2.1 22.8 1.0 O B:HOH219 2.1 22.2 1.0 O B:HOH210 2.1 21.2 1.0 O C:HOH115 4.1 25.9 1.0 O B:HOH239 4.2 30.4 1.0 O6 C:DG22 4.2 21.4 1.0 O C:HOH127 4.3 20.6 1.0 O B:HOH257 4.4 30.0 1.0 C5 B:DC1 4.4 21.1 1.0 O6 B:DG2 4.4 19.1 1.0 N7 B:DG2 4.4 19.7 1.0 H42 B:DC3 4.8 26.0 1.0 C6 B:DC1 4.8 21.5 1.0

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437