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Magnesium in PDB 8efh: Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ (pdb code 8efh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+, PDB code: 8efh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in 8efh

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Magnesium binding site 1 out of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2001

b:133.6
occ:1.00
OG1 A:THR185 2.2 144.7 1.0
O1B A:ADP2002 2.8 145.8 1.0
O3B A:ADP2002 2.9 145.8 1.0
OG A:SER242 3.1 114.0 1.0
PB A:ADP2002 3.4 145.8 1.0
CB A:THR185 3.5 144.7 1.0
N A:THR185 3.5 144.7 1.0
OE1 A:GLU228 3.6 123.3 1.0
OE2 A:GLU228 3.7 123.3 1.0
CB A:LYS184 3.9 141.8 1.0
CB A:SER242 3.9 114.0 1.0
CA A:THR185 3.9 144.7 1.0
CD A:GLU228 4.0 123.3 1.0
O2A A:ADP2002 4.3 145.8 1.0
C A:LYS184 4.4 141.8 1.0
O3A A:ADP2002 4.5 145.8 1.0
O2B A:ADP2002 4.5 145.8 1.0
CG2 A:THR185 4.5 144.7 1.0
CA A:LYS184 4.6 141.8 1.0
O1A A:ADP2002 4.6 145.8 1.0
PA A:ADP2002 4.6 145.8 1.0
O A:ASN240 4.7 119.5 1.0
ND2 A:ASN232 4.8 115.4 1.0
CG A:LYS184 4.8 141.8 1.0
N A:SER242 4.9 114.0 1.0
N A:LYS184 4.9 141.8 1.0

Magnesium binding site 2 out of 6 in 8efh

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Magnesium binding site 2 out of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg402

b:33.7
occ:1.00
O3B F:ADP401 2.1 33.8 1.0
PB F:ADP401 3.1 33.8 1.0
O2B F:ADP401 3.2 33.8 1.0
OE1 F:GLN137 3.4 35.2 1.0
OD1 F:ASP154 3.5 32.6 1.0
O3A F:ADP401 3.6 33.8 1.0
CD F:GLN137 3.9 35.2 1.0
NE2 F:GLN137 4.0 35.2 1.0
CA F:GLY156 4.3 35.6 1.0
O1B F:ADP401 4.5 33.8 1.0
CG F:ASP154 4.5 32.6 1.0
O2A F:ADP401 4.8 33.8 1.0
OD2 F:ASP154 4.8 32.6 1.0
CA F:GLY13 4.8 37.5 1.0
N F:GLY156 4.8 35.6 1.0
PA F:ADP401 4.9 33.8 1.0
CG2 F:VAL339 4.9 34.9 1.0

Magnesium binding site 3 out of 6 in 8efh

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Magnesium binding site 3 out of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg402

b:33.8
occ:1.00
O2B B:ADP401 2.1 38.2 1.0
PB B:ADP401 3.0 38.2 1.0
O3B B:ADP401 3.0 38.2 1.0
OE1 B:GLN137 3.1 37.2 1.0
OD2 B:ASP154 3.4 34.5 1.0
CD B:GLN137 3.8 37.2 1.0
O3A B:ADP401 3.8 38.2 1.0
NE2 B:GLN137 4.1 37.2 1.0
CG B:ASP154 4.3 34.5 1.0
O1B B:ADP401 4.4 38.2 1.0
O2A B:ADP401 4.4 38.2 1.0
CA B:GLY156 4.5 37.0 1.0
OD1 B:ASP154 4.7 34.5 1.0
OD1 B:ASP11 4.7 37.6 1.0
PA B:ADP401 4.8 38.2 1.0
CG2 B:VAL339 4.9 34.0 1.0
CA B:GLY13 4.9 39.3 1.0
CG B:GLN137 5.0 37.2 1.0

Magnesium binding site 4 out of 6 in 8efh

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Magnesium binding site 4 out of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg402

b:42.1
occ:1.00
O3B C:ADP401 2.1 42.5 1.0
O2B C:ADP401 2.1 42.5 1.0
PB C:ADP401 2.5 42.5 1.0
O3A C:ADP401 3.3 42.5 1.0
OE1 C:GLN137 3.5 38.5 1.0
O1B C:ADP401 3.9 42.5 1.0
OD1 C:ASP154 3.9 34.2 1.0
CD C:GLN137 4.0 38.5 1.0
NE2 C:GLN137 4.2 38.5 1.0
O2A C:ADP401 4.4 42.5 1.0
PA C:ADP401 4.4 42.5 1.0
OD2 C:ASP154 4.5 34.2 1.0
CG2 C:VAL339 4.5 37.4 1.0
CA C:GLY156 4.6 38.0 1.0
CG C:ASP154 4.7 34.2 1.0
OD1 C:ASP11 5.0 42.5 1.0

Magnesium binding site 5 out of 6 in 8efh

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Magnesium binding site 5 out of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg402

b:33.9
occ:1.00
O3B D:ADP401 2.2 36.8 1.0
O2B D:ADP401 3.0 36.8 1.0
PB D:ADP401 3.0 36.8 1.0
OE1 D:GLN137 3.3 34.7 1.0
O3A D:ADP401 3.6 36.8 1.0
OD1 D:ASP154 3.7 30.4 1.0
CD D:GLN137 4.0 34.7 1.0
O1B D:ADP401 4.4 36.8 1.0
CA D:GLY156 4.4 34.5 1.0
NE2 D:GLN137 4.4 34.7 1.0
OD1 D:ASP11 4.6 36.9 1.0
CG D:ASP154 4.6 30.4 1.0
CG2 D:VAL339 4.6 33.5 1.0
O2A D:ADP401 4.6 36.8 1.0
PA D:ADP401 4.7 36.8 1.0
OD2 D:ASP154 4.8 30.4 1.0
CA D:GLY13 4.9 38.3 1.0
OD2 D:ASP11 5.0 36.9 1.0

Magnesium binding site 6 out of 6 in 8efh

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Magnesium binding site 6 out of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg402

b:37.6
occ:1.00
O3B E:ADP401 2.1 32.7 1.0
O2B E:ADP401 2.5 32.7 1.0
PB E:ADP401 2.7 32.7 1.0
O3A E:ADP401 3.4 32.7 1.0
OE1 E:GLN137 3.6 37.6 1.0
CD E:GLN137 4.1 37.6 1.0
O1B E:ADP401 4.1 32.7 1.0
NE2 E:GLN137 4.1 37.6 1.0
OD1 E:ASP154 4.2 35.4 1.0
OD1 E:ASP11 4.3 38.5 1.0
O2A E:ADP401 4.6 32.7 1.0
PA E:ADP401 4.6 32.7 1.0
CA E:GLY13 4.7 40.4 1.0
CG2 E:VAL339 4.7 35.1 1.0
OD2 E:ASP11 4.8 38.5 1.0
CA E:GLY156 4.8 35.4 1.0
OD2 E:ASP154 4.8 35.4 1.0
CG E:ASP11 4.9 38.5 1.0
CG E:ASP154 5.0 35.4 1.0

Reference:

M.H.Doran, M.J.Rynkiewicz, D.Rassici, S.M.L.Bodt, E.Bullitt, C.M.Yengo, J.R.Moore, W.Lehman. Conformational Changes Linked to Adp Release From Human Cardiac Myosin Bound to Actin-Tropomyosin To Be Published.
Page generated: Fri Oct 4 01:12:36 2024

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