Magnesium in PDB 8efh: Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
(pdb code 8efh). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the
Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+, PDB code: 8efh:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
Magnesium binding site 1 out
of 6 in 8efh
Go back to
Magnesium Binding Sites List in 8efh
Magnesium binding site 1 out
of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg2001
b:133.6
occ:1.00
|
OG1
|
A:THR185
|
2.2
|
144.7
|
1.0
|
O1B
|
A:ADP2002
|
2.8
|
145.8
|
1.0
|
O3B
|
A:ADP2002
|
2.9
|
145.8
|
1.0
|
OG
|
A:SER242
|
3.1
|
114.0
|
1.0
|
PB
|
A:ADP2002
|
3.4
|
145.8
|
1.0
|
CB
|
A:THR185
|
3.5
|
144.7
|
1.0
|
N
|
A:THR185
|
3.5
|
144.7
|
1.0
|
OE1
|
A:GLU228
|
3.6
|
123.3
|
1.0
|
OE2
|
A:GLU228
|
3.7
|
123.3
|
1.0
|
CB
|
A:LYS184
|
3.9
|
141.8
|
1.0
|
CB
|
A:SER242
|
3.9
|
114.0
|
1.0
|
CA
|
A:THR185
|
3.9
|
144.7
|
1.0
|
CD
|
A:GLU228
|
4.0
|
123.3
|
1.0
|
O2A
|
A:ADP2002
|
4.3
|
145.8
|
1.0
|
C
|
A:LYS184
|
4.4
|
141.8
|
1.0
|
O3A
|
A:ADP2002
|
4.5
|
145.8
|
1.0
|
O2B
|
A:ADP2002
|
4.5
|
145.8
|
1.0
|
CG2
|
A:THR185
|
4.5
|
144.7
|
1.0
|
CA
|
A:LYS184
|
4.6
|
141.8
|
1.0
|
O1A
|
A:ADP2002
|
4.6
|
145.8
|
1.0
|
PA
|
A:ADP2002
|
4.6
|
145.8
|
1.0
|
O
|
A:ASN240
|
4.7
|
119.5
|
1.0
|
ND2
|
A:ASN232
|
4.8
|
115.4
|
1.0
|
CG
|
A:LYS184
|
4.8
|
141.8
|
1.0
|
N
|
A:SER242
|
4.9
|
114.0
|
1.0
|
N
|
A:LYS184
|
4.9
|
141.8
|
1.0
|
|
Magnesium binding site 2 out
of 6 in 8efh
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Magnesium Binding Sites List in 8efh
Magnesium binding site 2 out
of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg402
b:33.7
occ:1.00
|
O3B
|
F:ADP401
|
2.1
|
33.8
|
1.0
|
PB
|
F:ADP401
|
3.1
|
33.8
|
1.0
|
O2B
|
F:ADP401
|
3.2
|
33.8
|
1.0
|
OE1
|
F:GLN137
|
3.4
|
35.2
|
1.0
|
OD1
|
F:ASP154
|
3.5
|
32.6
|
1.0
|
O3A
|
F:ADP401
|
3.6
|
33.8
|
1.0
|
CD
|
F:GLN137
|
3.9
|
35.2
|
1.0
|
NE2
|
F:GLN137
|
4.0
|
35.2
|
1.0
|
CA
|
F:GLY156
|
4.3
|
35.6
|
1.0
|
O1B
|
F:ADP401
|
4.5
|
33.8
|
1.0
|
CG
|
F:ASP154
|
4.5
|
32.6
|
1.0
|
O2A
|
F:ADP401
|
4.8
|
33.8
|
1.0
|
OD2
|
F:ASP154
|
4.8
|
32.6
|
1.0
|
CA
|
F:GLY13
|
4.8
|
37.5
|
1.0
|
N
|
F:GLY156
|
4.8
|
35.6
|
1.0
|
PA
|
F:ADP401
|
4.9
|
33.8
|
1.0
|
CG2
|
F:VAL339
|
4.9
|
34.9
|
1.0
|
|
Magnesium binding site 3 out
of 6 in 8efh
Go back to
Magnesium Binding Sites List in 8efh
Magnesium binding site 3 out
of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:33.8
occ:1.00
|
O2B
|
B:ADP401
|
2.1
|
38.2
|
1.0
|
PB
|
B:ADP401
|
3.0
|
38.2
|
1.0
|
O3B
|
B:ADP401
|
3.0
|
38.2
|
1.0
|
OE1
|
B:GLN137
|
3.1
|
37.2
|
1.0
|
OD2
|
B:ASP154
|
3.4
|
34.5
|
1.0
|
CD
|
B:GLN137
|
3.8
|
37.2
|
1.0
|
O3A
|
B:ADP401
|
3.8
|
38.2
|
1.0
|
NE2
|
B:GLN137
|
4.1
|
37.2
|
1.0
|
CG
|
B:ASP154
|
4.3
|
34.5
|
1.0
|
O1B
|
B:ADP401
|
4.4
|
38.2
|
1.0
|
O2A
|
B:ADP401
|
4.4
|
38.2
|
1.0
|
CA
|
B:GLY156
|
4.5
|
37.0
|
1.0
|
OD1
|
B:ASP154
|
4.7
|
34.5
|
1.0
|
OD1
|
B:ASP11
|
4.7
|
37.6
|
1.0
|
PA
|
B:ADP401
|
4.8
|
38.2
|
1.0
|
CG2
|
B:VAL339
|
4.9
|
34.0
|
1.0
|
CA
|
B:GLY13
|
4.9
|
39.3
|
1.0
|
CG
|
B:GLN137
|
5.0
|
37.2
|
1.0
|
|
Magnesium binding site 4 out
of 6 in 8efh
Go back to
Magnesium Binding Sites List in 8efh
Magnesium binding site 4 out
of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:42.1
occ:1.00
|
O3B
|
C:ADP401
|
2.1
|
42.5
|
1.0
|
O2B
|
C:ADP401
|
2.1
|
42.5
|
1.0
|
PB
|
C:ADP401
|
2.5
|
42.5
|
1.0
|
O3A
|
C:ADP401
|
3.3
|
42.5
|
1.0
|
OE1
|
C:GLN137
|
3.5
|
38.5
|
1.0
|
O1B
|
C:ADP401
|
3.9
|
42.5
|
1.0
|
OD1
|
C:ASP154
|
3.9
|
34.2
|
1.0
|
CD
|
C:GLN137
|
4.0
|
38.5
|
1.0
|
NE2
|
C:GLN137
|
4.2
|
38.5
|
1.0
|
O2A
|
C:ADP401
|
4.4
|
42.5
|
1.0
|
PA
|
C:ADP401
|
4.4
|
42.5
|
1.0
|
OD2
|
C:ASP154
|
4.5
|
34.2
|
1.0
|
CG2
|
C:VAL339
|
4.5
|
37.4
|
1.0
|
CA
|
C:GLY156
|
4.6
|
38.0
|
1.0
|
CG
|
C:ASP154
|
4.7
|
34.2
|
1.0
|
OD1
|
C:ASP11
|
5.0
|
42.5
|
1.0
|
|
Magnesium binding site 5 out
of 6 in 8efh
Go back to
Magnesium Binding Sites List in 8efh
Magnesium binding site 5 out
of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:33.9
occ:1.00
|
O3B
|
D:ADP401
|
2.2
|
36.8
|
1.0
|
O2B
|
D:ADP401
|
3.0
|
36.8
|
1.0
|
PB
|
D:ADP401
|
3.0
|
36.8
|
1.0
|
OE1
|
D:GLN137
|
3.3
|
34.7
|
1.0
|
O3A
|
D:ADP401
|
3.6
|
36.8
|
1.0
|
OD1
|
D:ASP154
|
3.7
|
30.4
|
1.0
|
CD
|
D:GLN137
|
4.0
|
34.7
|
1.0
|
O1B
|
D:ADP401
|
4.4
|
36.8
|
1.0
|
CA
|
D:GLY156
|
4.4
|
34.5
|
1.0
|
NE2
|
D:GLN137
|
4.4
|
34.7
|
1.0
|
OD1
|
D:ASP11
|
4.6
|
36.9
|
1.0
|
CG
|
D:ASP154
|
4.6
|
30.4
|
1.0
|
CG2
|
D:VAL339
|
4.6
|
33.5
|
1.0
|
O2A
|
D:ADP401
|
4.6
|
36.8
|
1.0
|
PA
|
D:ADP401
|
4.7
|
36.8
|
1.0
|
OD2
|
D:ASP154
|
4.8
|
30.4
|
1.0
|
CA
|
D:GLY13
|
4.9
|
38.3
|
1.0
|
OD2
|
D:ASP11
|
5.0
|
36.9
|
1.0
|
|
Magnesium binding site 6 out
of 6 in 8efh
Go back to
Magnesium Binding Sites List in 8efh
Magnesium binding site 6 out
of 6 in the Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Helical Reconstruction of the Human Cardiac Actin-Tropomyosin-Myosin Complex in Complex with Adp-MG2+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg402
b:37.6
occ:1.00
|
O3B
|
E:ADP401
|
2.1
|
32.7
|
1.0
|
O2B
|
E:ADP401
|
2.5
|
32.7
|
1.0
|
PB
|
E:ADP401
|
2.7
|
32.7
|
1.0
|
O3A
|
E:ADP401
|
3.4
|
32.7
|
1.0
|
OE1
|
E:GLN137
|
3.6
|
37.6
|
1.0
|
CD
|
E:GLN137
|
4.1
|
37.6
|
1.0
|
O1B
|
E:ADP401
|
4.1
|
32.7
|
1.0
|
NE2
|
E:GLN137
|
4.1
|
37.6
|
1.0
|
OD1
|
E:ASP154
|
4.2
|
35.4
|
1.0
|
OD1
|
E:ASP11
|
4.3
|
38.5
|
1.0
|
O2A
|
E:ADP401
|
4.6
|
32.7
|
1.0
|
PA
|
E:ADP401
|
4.6
|
32.7
|
1.0
|
CA
|
E:GLY13
|
4.7
|
40.4
|
1.0
|
CG2
|
E:VAL339
|
4.7
|
35.1
|
1.0
|
OD2
|
E:ASP11
|
4.8
|
38.5
|
1.0
|
CA
|
E:GLY156
|
4.8
|
35.4
|
1.0
|
OD2
|
E:ASP154
|
4.8
|
35.4
|
1.0
|
CG
|
E:ASP11
|
4.9
|
38.5
|
1.0
|
CG
|
E:ASP154
|
5.0
|
35.4
|
1.0
|
|
Reference:
M.H.Doran,
M.J.Rynkiewicz,
D.Rassici,
S.M.L.Bodt,
E.Bullitt,
C.M.Yengo,
J.R.Moore,
W.Lehman.
Conformational Changes Linked to Adp Release From Human Cardiac Myosin Bound to Actin-Tropomyosin To Be Published.
Page generated: Fri Oct 4 01:12:36 2024
|